miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11593 5' -48.6 NC_003085.1 + 26590 0.66 0.973685
Target:  5'- gUCCGgcGGCGacacGCUCuuCUUCGAccGUCg -3'
miRNA:   3'- aGGGCuaCUGC----UGAGuuGAAGCU--UAG- -5'
11593 5' -48.6 NC_003085.1 + 44532 0.66 0.967156
Target:  5'- aCCCGccgGACGACUC--UUUCGAc-- -3'
miRNA:   3'- aGGGCua-CUGCUGAGuuGAAGCUuag -5'
11593 5' -48.6 NC_003085.1 + 37527 0.66 0.967156
Target:  5'- -aCCGGUGGCGGCUCGucagCGGu-- -3'
miRNA:   3'- agGGCUACUGCUGAGUugaaGCUuag -5'
11593 5' -48.6 NC_003085.1 + 29821 0.66 0.959558
Target:  5'- cCCCGGagccccugucaUGACGAa-CGACUUCGAu-- -3'
miRNA:   3'- aGGGCU-----------ACUGCUgaGUUGAAGCUuag -5'
11593 5' -48.6 NC_003085.1 + 14083 0.67 0.950829
Target:  5'- gCCCGAUGugaACGAaCUCAACUggaGGUCc -3'
miRNA:   3'- aGGGCUAC---UGCU-GAGUUGAagcUUAG- -5'
11593 5' -48.6 NC_003085.1 + 43407 0.68 0.9238
Target:  5'- aUCCCGGUGG-GGCUCGGga--GAAUCa -3'
miRNA:   3'- -AGGGCUACUgCUGAGUUgaagCUUAG- -5'
11593 5' -48.6 NC_003085.1 + 18830 0.68 0.917482
Target:  5'- gCCaCGGUaguugaGugGGCUCGACUugUCGGAUUg -3'
miRNA:   3'- aGG-GCUA------CugCUGAGUUGA--AGCUUAG- -5'
11593 5' -48.6 NC_003085.1 + 6938 0.68 0.910861
Target:  5'- aUCCCGGgcggcugGGCGG-UCGACUUCGGc-- -3'
miRNA:   3'- -AGGGCUa------CUGCUgAGUUGAAGCUuag -5'
11593 5' -48.6 NC_003085.1 + 9497 0.7 0.856315
Target:  5'- gUCgCGGUGACGAUggCGGCgcgcggCGggUCa -3'
miRNA:   3'- -AGgGCUACUGCUGa-GUUGaa----GCuuAG- -5'
11593 5' -48.6 NC_003085.1 + 3004 0.71 0.809482
Target:  5'- cCuuGGUGAUGgacucuggguGCUCGACUUCGAGg- -3'
miRNA:   3'- aGggCUACUGC----------UGAGUUGAAGCUUag -5'
11593 5' -48.6 NC_003085.1 + 13136 0.73 0.67925
Target:  5'- uUCCUGuucGAgGGCUCAAC-UCGAAUCc -3'
miRNA:   3'- -AGGGCua-CUgCUGAGUUGaAGCUUAG- -5'
11593 5' -48.6 NC_003085.1 + 35176 1.11 0.003388
Target:  5'- uUCCCGAUGACGACUCAACUUCGAAUCu -3'
miRNA:   3'- -AGGGCUACUGCUGAGUUGAAGCUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.