miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11594 3' -55.6 NC_003085.1 + 24961 0.68 0.556338
Target:  5'- gACGACGGAGuacGGcggCAUCCUgCCGCAgaacaucuCGGa -3'
miRNA:   3'- -UGCUGCCUU---UCa--GUGGGA-GGCGU--------GCC- -5'
11594 3' -55.6 NC_003085.1 + 25965 0.66 0.718667
Target:  5'- cCGAgGGGAA--UGCCCccuccgagcaacUCCGCGCGGa -3'
miRNA:   3'- uGCUgCCUUUcaGUGGG------------AGGCGUGCC- -5'
11594 3' -55.6 NC_003085.1 + 26542 0.68 0.57784
Target:  5'- cGCGGCcucGGAGGGcuUCGCCCcggcagccUCCGC-CGGa -3'
miRNA:   3'- -UGCUG---CCUUUC--AGUGGG--------AGGCGuGCC- -5'
11594 3' -55.6 NC_003085.1 + 27555 0.69 0.503739
Target:  5'- gGCGGCGGuGAcGUCGCCaUCUggcaggGCACGGa -3'
miRNA:   3'- -UGCUGCCuUU-CAGUGGgAGG------CGUGCC- -5'
11594 3' -55.6 NC_003085.1 + 29929 0.66 0.708041
Target:  5'- cGCGuCGGg----CGCCgUCCGCugGGc -3'
miRNA:   3'- -UGCuGCCuuucaGUGGgAGGCGugCC- -5'
11594 3' -55.6 NC_003085.1 + 31318 0.72 0.345002
Target:  5'- cCGccuCGGGuccGUCACCUugUCCGCGCGGa -3'
miRNA:   3'- uGCu--GCCUuu-CAGUGGG--AGGCGUGCC- -5'
11594 3' -55.6 NC_003085.1 + 36405 1.11 0.000762
Target:  5'- gACGACGGAAAGUCACCCUCCGCACGGa -3'
miRNA:   3'- -UGCUGCCUUUCAGUGGGAGGCGUGCC- -5'
11594 3' -55.6 NC_003085.1 + 36563 0.67 0.610404
Target:  5'- gUGGCGG--GGUCGCCa-UUGCACGGg -3'
miRNA:   3'- uGCUGCCuuUCAGUGGgaGGCGUGCC- -5'
11594 3' -55.6 NC_003085.1 + 37145 0.67 0.63222
Target:  5'- gGCGACGGcgGG-CACCCUggCgGUgACGGg -3'
miRNA:   3'- -UGCUGCCuuUCaGUGGGA--GgCG-UGCC- -5'
11594 3' -55.6 NC_003085.1 + 37742 0.71 0.415189
Target:  5'- aGCGuCGGGGAGUCuguacaaCUUCCGCGCuGGu -3'
miRNA:   3'- -UGCuGCCUUUCAGug-----GGAGGCGUG-CC- -5'
11594 3' -55.6 NC_003085.1 + 38248 0.7 0.483298
Target:  5'- uCGGCGGu-GGcCACCUacuUCCGCGCGa -3'
miRNA:   3'- uGCUGCCuuUCaGUGGG---AGGCGUGCc -5'
11594 3' -55.6 NC_003085.1 + 39875 0.68 0.556338
Target:  5'- gAUGGCGGAGAGaCGCCggugCUCgGCgGCGGc -3'
miRNA:   3'- -UGCUGCCUUUCaGUGG----GAGgCG-UGCC- -5'
11594 3' -55.6 NC_003085.1 + 42690 0.71 0.415189
Target:  5'- --aGCGGAAGGgcucUCGCCgUCCGcCACGGc -3'
miRNA:   3'- ugcUGCCUUUC----AGUGGgAGGC-GUGCC- -5'
11594 3' -55.6 NC_003085.1 + 43130 0.67 0.664918
Target:  5'- uUGGCGuAGAGcgCGCCCaugCUGCGCGGu -3'
miRNA:   3'- uGCUGCcUUUCa-GUGGGa--GGCGUGCC- -5'
11594 3' -55.6 NC_003085.1 + 45029 0.67 0.654034
Target:  5'- gGCGACGGuGAGgagCACCgUCgGgCACcGGa -3'
miRNA:   3'- -UGCUGCCuUUCa--GUGGgAGgC-GUG-CC- -5'
11594 3' -55.6 NC_003085.1 + 48417 0.69 0.524546
Target:  5'- uCGGCGGcgcuGG-CuuCCUCCGCAUGGa -3'
miRNA:   3'- uGCUGCCuu--UCaGugGGAGGCGUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.