Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11595 | 3' | -55.7 | NC_003085.1 | + | 47434 | 0.72 | 0.313692 |
Target: 5'- gCGGGCCaaacugcuccaUGucCUGCGCGUcgaagucgaaccGGUCCGCGUa -3' miRNA: 3'- -GCCCGG-----------ACu-GACGUGUA------------UCAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 47409 | 0.68 | 0.547914 |
Target: 5'- cCGGGCCuuggcauccauggUGACggGCACuUGGUggaacacaucgcgCCACGCc -3' miRNA: 3'- -GCCCGG-------------ACUGa-CGUGuAUCA-------------GGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 46995 | 0.68 | 0.536077 |
Target: 5'- -uGGCCacacuaugcgucagUGGCUGaCGCAUAGUCaagGCGCu -3' miRNA: 3'- gcCCGG--------------ACUGAC-GUGUAUCAGg--UGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 46950 | 0.68 | 0.538223 |
Target: 5'- gGGGCC-GACgcggGCACAccGUCCgucagccACGCc -3' miRNA: 3'- gCCCGGaCUGa---CGUGUauCAGG-------UGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 46038 | 0.68 | 0.539297 |
Target: 5'- uGGGCU---CUGCGCA---UCCGCGCg -3' miRNA: 3'- gCCCGGacuGACGUGUaucAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 42395 | 0.66 | 0.68209 |
Target: 5'- gGGGCC--ACUGaagaGCAUGGgccuUUCGCGCg -3' miRNA: 3'- gCCCGGacUGACg---UGUAUC----AGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 42056 | 0.67 | 0.604791 |
Target: 5'- aGGGCCccagucgGACUcGUGCc-AGUUCACGCg -3' miRNA: 3'- gCCCGGa------CUGA-CGUGuaUCAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 40507 | 0.66 | 0.637973 |
Target: 5'- cCGcGGCCcuUGGCccaGCGCAgguUGG-CCACGCg -3' miRNA: 3'- -GC-CCGG--ACUGa--CGUGU---AUCaGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 38339 | 0.7 | 0.39865 |
Target: 5'- uCGGGCCUGGCacGCGCAacuUCCugGg -3' miRNA: 3'- -GCCCGGACUGa-CGUGUaucAGGugCg -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 38105 | 0.66 | 0.649037 |
Target: 5'- aCGGuGuCCUGGCUGaCGCcgAGUUCuucCGCc -3' miRNA: 3'- -GCC-C-GGACUGAC-GUGuaUCAGGu--GCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 36699 | 1.11 | 0.000566 |
Target: 5'- cCGGGCCUGACUGCACAUAGUCCACGCc -3' miRNA: 3'- -GCCCGGACUGACGUGUAUCAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 32173 | 0.69 | 0.496977 |
Target: 5'- -cGGCCaGGCUGCGCcaGUGGUggCGCGCg -3' miRNA: 3'- gcCCGGaCUGACGUG--UAUCAg-GUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 30974 | 0.68 | 0.554405 |
Target: 5'- -uGGCCgccuugaggacgggGGCUGCGaGUuugaAGUCCACGCg -3' miRNA: 3'- gcCCGGa-------------CUGACGUgUA----UCAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 30067 | 0.66 | 0.68209 |
Target: 5'- uGGGCCUuGCUgggGUACc-GGcCCACGCg -3' miRNA: 3'- gCCCGGAcUGA---CGUGuaUCaGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 23880 | 0.69 | 0.486627 |
Target: 5'- gGGGCgUGAgCgaacgGCAgCAgccGUCCACGCg -3' miRNA: 3'- gCCCGgACU-Ga----CGU-GUau-CAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 20760 | 0.67 | 0.615841 |
Target: 5'- aGGGCCa-GC-GCGCAgc-UCCGCGCg -3' miRNA: 3'- gCCCGGacUGaCGUGUaucAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 19415 | 0.7 | 0.436521 |
Target: 5'- uGGGCCUG-CUGCAacuuGUgCugGCc -3' miRNA: 3'- gCCCGGACuGACGUguauCAgGugCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 18181 | 0.68 | 0.517965 |
Target: 5'- uCGGGCU--AgUGCACAUuGUCCACa- -3' miRNA: 3'- -GCCCGGacUgACGUGUAuCAGGUGcg -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 18098 | 0.76 | 0.173622 |
Target: 5'- -uGGCCUGgaagcgGCUGCGCAUGgcggccuaccgguacGUCCGCGCg -3' miRNA: 3'- gcCCGGAC------UGACGUGUAU---------------CAGGUGCG- -5' |
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11595 | 3' | -55.7 | NC_003085.1 | + | 14273 | 0.66 | 0.660085 |
Target: 5'- uGcGGCCaGGCUGCugcCGUcaAGcgCCGCGCa -3' miRNA: 3'- gC-CCGGaCUGACGu--GUA--UCa-GGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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