miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11595 5' -59 NC_003085.1 + 33877 0.66 0.511278
Target:  5'- -gGCggCGGGGUuUGCG--ACCUCCUg -3'
miRNA:   3'- ugCGa-GCCCCAuACGCgaUGGAGGGg -5'
11595 5' -59 NC_003085.1 + 14680 0.66 0.490911
Target:  5'- cCGCUCGucGUAcUGCGcCUGCCgaaCCCg -3'
miRNA:   3'- uGCGAGCccCAU-ACGC-GAUGGag-GGG- -5'
11595 5' -59 NC_003085.1 + 20606 0.66 0.461093
Target:  5'- aGCGCcgcggaagUCGGGcGgcgcggGUGCuUGCUUCCCCa -3'
miRNA:   3'- -UGCG--------AGCCC-Caua---CGCG-AUGGAGGGG- -5'
11595 5' -59 NC_003085.1 + 10775 0.67 0.451367
Target:  5'- gACGCUgGGGGcAUGC-C-ACCUCUUCc -3'
miRNA:   3'- -UGCGAgCCCCaUACGcGaUGGAGGGG- -5'
11595 5' -59 NC_003085.1 + 28605 0.67 0.447508
Target:  5'- cACGC-CGGuGGUGUgGCGCUcgcugcugcggccgGCCUuucgauaCCCCu -3'
miRNA:   3'- -UGCGaGCC-CCAUA-CGCGA--------------UGGA-------GGGG- -5'
11595 5' -59 NC_003085.1 + 624 0.67 0.441755
Target:  5'- cGCGCUCGaGGcugGCGCggACCUCgUCg -3'
miRNA:   3'- -UGCGAGCcCCauaCGCGa-UGGAGgGG- -5'
11595 5' -59 NC_003085.1 + 2393 0.67 0.422884
Target:  5'- uCGCagguacucccuUUGGGGUucgGCGCcugACCUCaCCCu -3'
miRNA:   3'- uGCG-----------AGCCCCAua-CGCGa--UGGAG-GGG- -5'
11595 5' -59 NC_003085.1 + 11379 0.67 0.413632
Target:  5'- gGCGC-CGGacaccUGCGCUGCCgUCUCCg -3'
miRNA:   3'- -UGCGaGCCccau-ACGCGAUGG-AGGGG- -5'
11595 5' -59 NC_003085.1 + 31167 0.67 0.404505
Target:  5'- aGCGC-CGGGGcGUGCaccgcccggugGCUuCUUCCCUg -3'
miRNA:   3'- -UGCGaGCCCCaUACG-----------CGAuGGAGGGG- -5'
11595 5' -59 NC_003085.1 + 42183 0.67 0.404505
Target:  5'- -aGCUUGGcGGcgGUGCGCcACgUCUCCu -3'
miRNA:   3'- ugCGAGCC-CCa-UACGCGaUGgAGGGG- -5'
11595 5' -59 NC_003085.1 + 8337 0.67 0.404505
Target:  5'- -aGUaCGGGGUGccGCGCUcggccuggGCCUCCaCCc -3'
miRNA:   3'- ugCGaGCCCCAUa-CGCGA--------UGGAGG-GG- -5'
11595 5' -59 NC_003085.1 + 34366 0.68 0.395507
Target:  5'- cCGCUCGucgaGGGUGagGCGCcgucCCUCCuCCa -3'
miRNA:   3'- uGCGAGC----CCCAUa-CGCGau--GGAGG-GG- -5'
11595 5' -59 NC_003085.1 + 37354 0.68 0.395507
Target:  5'- gGC-CUCGGGGgcguccgacuUGCGCgcgucACCcgCCCCg -3'
miRNA:   3'- -UGcGAGCCCCau--------ACGCGa----UGGa-GGGG- -5'
11595 5' -59 NC_003085.1 + 11550 0.68 0.393723
Target:  5'- aGCGC-CGGGGccAUGCGCcaacgcaccguCCUgCCCg -3'
miRNA:   3'- -UGCGaGCCCCa-UACGCGau---------GGAgGGG- -5'
11595 5' -59 NC_003085.1 + 26834 0.68 0.377903
Target:  5'- gGCGCUCcuGGGU--GCcCUGCUUCCCUg -3'
miRNA:   3'- -UGCGAGc-CCCAuaCGcGAUGGAGGGG- -5'
11595 5' -59 NC_003085.1 + 11788 0.68 0.374447
Target:  5'- cGCGCUCcGGGcGUGUcgGCUGCCccaucgccgggugCCCCg -3'
miRNA:   3'- -UGCGAGcCCCaUACG--CGAUGGa------------GGGG- -5'
11595 5' -59 NC_003085.1 + 7538 0.69 0.344309
Target:  5'- cGCGCgggccgaGGGGUGUGaCGUcgACCUUgCCg -3'
miRNA:   3'- -UGCGag-----CCCCAUAC-GCGa-UGGAGgGG- -5'
11595 5' -59 NC_003085.1 + 48001 0.69 0.336253
Target:  5'- gGCGaCUUGGGGUgucAUGCGC----UCCCCu -3'
miRNA:   3'- -UGC-GAGCCCCA---UACGCGauggAGGGG- -5'
11595 5' -59 NC_003085.1 + 15177 0.69 0.328336
Target:  5'- gACGCUCGGcggaacacaaGGgcgGCuGCUACgUCCCUg -3'
miRNA:   3'- -UGCGAGCC----------CCauaCG-CGAUGgAGGGG- -5'
11595 5' -59 NC_003085.1 + 12663 0.71 0.250353
Target:  5'- aGCGUgCGGGacgaaGUGUGCGcCUGCCUCCg- -3'
miRNA:   3'- -UGCGaGCCC-----CAUACGC-GAUGGAGGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.