Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11595 | 5' | -59 | NC_003085.1 | + | 33877 | 0.66 | 0.511278 |
Target: 5'- -gGCggCGGGGUuUGCG--ACCUCCUg -3' miRNA: 3'- ugCGa-GCCCCAuACGCgaUGGAGGGg -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 14680 | 0.66 | 0.490911 |
Target: 5'- cCGCUCGucGUAcUGCGcCUGCCgaaCCCg -3' miRNA: 3'- uGCGAGCccCAU-ACGC-GAUGGag-GGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 20606 | 0.66 | 0.461093 |
Target: 5'- aGCGCcgcggaagUCGGGcGgcgcggGUGCuUGCUUCCCCa -3' miRNA: 3'- -UGCG--------AGCCC-Caua---CGCG-AUGGAGGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 10775 | 0.67 | 0.451367 |
Target: 5'- gACGCUgGGGGcAUGC-C-ACCUCUUCc -3' miRNA: 3'- -UGCGAgCCCCaUACGcGaUGGAGGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 28605 | 0.67 | 0.447508 |
Target: 5'- cACGC-CGGuGGUGUgGCGCUcgcugcugcggccgGCCUuucgauaCCCCu -3' miRNA: 3'- -UGCGaGCC-CCAUA-CGCGA--------------UGGA-------GGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 624 | 0.67 | 0.441755 |
Target: 5'- cGCGCUCGaGGcugGCGCggACCUCgUCg -3' miRNA: 3'- -UGCGAGCcCCauaCGCGa-UGGAGgGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 2393 | 0.67 | 0.422884 |
Target: 5'- uCGCagguacucccuUUGGGGUucgGCGCcugACCUCaCCCu -3' miRNA: 3'- uGCG-----------AGCCCCAua-CGCGa--UGGAG-GGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 11379 | 0.67 | 0.413632 |
Target: 5'- gGCGC-CGGacaccUGCGCUGCCgUCUCCg -3' miRNA: 3'- -UGCGaGCCccau-ACGCGAUGG-AGGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 31167 | 0.67 | 0.404505 |
Target: 5'- aGCGC-CGGGGcGUGCaccgcccggugGCUuCUUCCCUg -3' miRNA: 3'- -UGCGaGCCCCaUACG-----------CGAuGGAGGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 42183 | 0.67 | 0.404505 |
Target: 5'- -aGCUUGGcGGcgGUGCGCcACgUCUCCu -3' miRNA: 3'- ugCGAGCC-CCa-UACGCGaUGgAGGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 8337 | 0.67 | 0.404505 |
Target: 5'- -aGUaCGGGGUGccGCGCUcggccuggGCCUCCaCCc -3' miRNA: 3'- ugCGaGCCCCAUa-CGCGA--------UGGAGG-GG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 34366 | 0.68 | 0.395507 |
Target: 5'- cCGCUCGucgaGGGUGagGCGCcgucCCUCCuCCa -3' miRNA: 3'- uGCGAGC----CCCAUa-CGCGau--GGAGG-GG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 37354 | 0.68 | 0.395507 |
Target: 5'- gGC-CUCGGGGgcguccgacuUGCGCgcgucACCcgCCCCg -3' miRNA: 3'- -UGcGAGCCCCau--------ACGCGa----UGGa-GGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 11550 | 0.68 | 0.393723 |
Target: 5'- aGCGC-CGGGGccAUGCGCcaacgcaccguCCUgCCCg -3' miRNA: 3'- -UGCGaGCCCCa-UACGCGau---------GGAgGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 26834 | 0.68 | 0.377903 |
Target: 5'- gGCGCUCcuGGGU--GCcCUGCUUCCCUg -3' miRNA: 3'- -UGCGAGc-CCCAuaCGcGAUGGAGGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 11788 | 0.68 | 0.374447 |
Target: 5'- cGCGCUCcGGGcGUGUcgGCUGCCccaucgccgggugCCCCg -3' miRNA: 3'- -UGCGAGcCCCaUACG--CGAUGGa------------GGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 7538 | 0.69 | 0.344309 |
Target: 5'- cGCGCgggccgaGGGGUGUGaCGUcgACCUUgCCg -3' miRNA: 3'- -UGCGag-----CCCCAUAC-GCGa-UGGAGgGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 48001 | 0.69 | 0.336253 |
Target: 5'- gGCGaCUUGGGGUgucAUGCGC----UCCCCu -3' miRNA: 3'- -UGC-GAGCCCCA---UACGCGauggAGGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 15177 | 0.69 | 0.328336 |
Target: 5'- gACGCUCGGcggaacacaaGGgcgGCuGCUACgUCCCUg -3' miRNA: 3'- -UGCGAGCC----------CCauaCG-CGAUGgAGGGG- -5' |
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11595 | 5' | -59 | NC_003085.1 | + | 12663 | 0.71 | 0.250353 |
Target: 5'- aGCGUgCGGGacgaaGUGUGCGcCUGCCUCCg- -3' miRNA: 3'- -UGCGaGCCC-----CAUACGC-GAUGGAGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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