miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11596 5' -58 NC_003085.1 + 705 0.66 0.544345
Target:  5'- -cACG-GGGCAacuccGCGugGCGCCUGaCGc -3'
miRNA:   3'- gaUGCgCCUGU-----CGCugCGUGGAC-GCc -5'
11596 5' -58 NC_003085.1 + 14955 0.66 0.544345
Target:  5'- aCUGCGCGaagcGCuGCGGCcCACCUcCGGg -3'
miRNA:   3'- -GAUGCGCc---UGuCGCUGcGUGGAcGCC- -5'
11596 5' -58 NC_003085.1 + 38856 0.66 0.544345
Target:  5'- aCUGCGaCGGcgcGCGGCGACaGCAUCaUGUucGGg -3'
miRNA:   3'- -GAUGC-GCC---UGUCGCUG-CGUGG-ACG--CC- -5'
11596 5' -58 NC_003085.1 + 27232 0.66 0.544345
Target:  5'- uCUACGCGGACga-GACGaaugGCCUGUuccGGu -3'
miRNA:   3'- -GAUGCGCCUGucgCUGCg---UGGACG---CC- -5'
11596 5' -58 NC_003085.1 + 28596 0.66 0.543294
Target:  5'- -gGCgGUGGACacgccggugguguGGCGcuCGCugCUGCGGc -3'
miRNA:   3'- gaUG-CGCCUG-------------UCGCu-GCGugGACGCC- -5'
11596 5' -58 NC_003085.1 + 7646 0.66 0.543294
Target:  5'- -gGCGCuuGGGCGGCGccgacauGCGCgaGCCUGUGc -3'
miRNA:   3'- gaUGCG--CCUGUCGC-------UGCG--UGGACGCc -5'
11596 5' -58 NC_003085.1 + 45596 0.66 0.533871
Target:  5'- -gACgGCGGGCGcgccGuCGACGCGCC-GUGGu -3'
miRNA:   3'- gaUG-CGCCUGU----C-GCUGCGUGGaCGCC- -5'
11596 5' -58 NC_003085.1 + 25660 0.66 0.533871
Target:  5'- gUGCuGCGGACuGCGAC-UACCgGcCGGa -3'
miRNA:   3'- gAUG-CGCCUGuCGCUGcGUGGaC-GCC- -5'
11596 5' -58 NC_003085.1 + 7040 0.66 0.533871
Target:  5'- -cGCGgGGugGGCGAUGaGCCcGCGc -3'
miRNA:   3'- gaUGCgCCugUCGCUGCgUGGaCGCc -5'
11596 5' -58 NC_003085.1 + 26716 0.66 0.533871
Target:  5'- -cGCGCaGGGCGGUGACgGCGCg-GCGc -3'
miRNA:   3'- gaUGCG-CCUGUCGCUG-CGUGgaCGCc -5'
11596 5' -58 NC_003085.1 + 13918 0.66 0.532828
Target:  5'- gUGCGCgcguuucGGACGGgGcGCGCGCCgaagaagaaGCGGa -3'
miRNA:   3'- gAUGCG-------CCUGUCgC-UGCGUGGa--------CGCC- -5'
11596 5' -58 NC_003085.1 + 19041 0.67 0.52347
Target:  5'- gCUGCGUcguGGAgAuuccGCGGCGCGCg-GCGGa -3'
miRNA:   3'- -GAUGCG---CCUgU----CGCUGCGUGgaCGCC- -5'
11596 5' -58 NC_003085.1 + 47221 0.67 0.52347
Target:  5'- ---gGUGGGCAgGCauuGCGCACCaGCGGu -3'
miRNA:   3'- gaugCGCCUGU-CGc--UGCGUGGaCGCC- -5'
11596 5' -58 NC_003085.1 + 2779 0.67 0.52347
Target:  5'- ---aGCaGGCAGCGGCGgCGCUccagGCGGc -3'
miRNA:   3'- gaugCGcCUGUCGCUGC-GUGGa---CGCC- -5'
11596 5' -58 NC_003085.1 + 3566 0.67 0.52347
Target:  5'- -gGCGgcCGGGCGGCaaGCGCGCCUcgcugccgagGCGGc -3'
miRNA:   3'- gaUGC--GCCUGUCGc-UGCGUGGA----------CGCC- -5'
11596 5' -58 NC_003085.1 + 15199 0.67 0.52347
Target:  5'- gUGCGC---CAGCGcCGCGCC-GCGGa -3'
miRNA:   3'- gAUGCGccuGUCGCuGCGUGGaCGCC- -5'
11596 5' -58 NC_003085.1 + 13124 0.67 0.513147
Target:  5'- -aGCGCGGGCucuGUGACua--CUGCGGu -3'
miRNA:   3'- gaUGCGCCUGu--CGCUGcgugGACGCC- -5'
11596 5' -58 NC_003085.1 + 26122 0.67 0.513147
Target:  5'- ---gGCGGcCGGCGGCGCuugGCCggccagaGCGGc -3'
miRNA:   3'- gaugCGCCuGUCGCUGCG---UGGa------CGCC- -5'
11596 5' -58 NC_003085.1 + 40652 0.67 0.502909
Target:  5'- -gACGCuGGCuGCGccGCGCaACCUcGCGGa -3'
miRNA:   3'- gaUGCGcCUGuCGC--UGCG-UGGA-CGCC- -5'
11596 5' -58 NC_003085.1 + 32137 0.67 0.502909
Target:  5'- -gACGgGGGCGGCugGugGCGCg-GUGGg -3'
miRNA:   3'- gaUGCgCCUGUCG--CugCGUGgaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.