miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11597 5' -52.5 NC_003085.1 + 5365 0.66 0.823002
Target:  5'- -gGCA--UUCCGUcgGCUGGccGCGGCGAu -3'
miRNA:   3'- caUGUugAAGGCG--CGACCa-UGUCGCU- -5'
11597 5' -52.5 NC_003085.1 + 22898 0.66 0.823002
Target:  5'- gGUGCGACUcCgGCGgaGGcUGCcggGGCGAa -3'
miRNA:   3'- -CAUGUUGAaGgCGCgaCC-AUG---UCGCU- -5'
11597 5' -52.5 NC_003085.1 + 46971 0.66 0.817272
Target:  5'- aGUGCGGCUgaagcgCCGCGCUGauggccacacuaugcGU-CAGUGGc -3'
miRNA:   3'- -CAUGUUGAa-----GGCGCGAC---------------CAuGUCGCU- -5'
11597 5' -52.5 NC_003085.1 + 3735 0.66 0.803617
Target:  5'- -gGCAGCacCCGCGCaggacuUGGUgaGCGGCGu -3'
miRNA:   3'- caUGUUGaaGGCGCG------ACCA--UGUCGCu -5'
11597 5' -52.5 NC_003085.1 + 33986 0.66 0.793631
Target:  5'- -cACGGCaccccugcgCCGCGuCUGGguucGCGGCGAu -3'
miRNA:   3'- caUGUUGaa-------GGCGC-GACCa---UGUCGCU- -5'
11597 5' -52.5 NC_003085.1 + 21097 0.67 0.783465
Target:  5'- aGUACGG--UCCGCGCcacggcGGUGCcGCGGa -3'
miRNA:   3'- -CAUGUUgaAGGCGCGa-----CCAUGuCGCU- -5'
11597 5' -52.5 NC_003085.1 + 12561 0.67 0.77313
Target:  5'- -cGCcGCUggCCGgGCUGGgACGGUGGa -3'
miRNA:   3'- caUGuUGAa-GGCgCGACCaUGUCGCU- -5'
11597 5' -52.5 NC_003085.1 + 40278 0.67 0.752007
Target:  5'- cUACAACcucgUCUGCGCcGGccuggGCAGCGu -3'
miRNA:   3'- cAUGUUGa---AGGCGCGaCCa----UGUCGCu -5'
11597 5' -52.5 NC_003085.1 + 27678 0.67 0.752007
Target:  5'- -gGCGGCga-CGUGCUGGUGCugucGCGu -3'
miRNA:   3'- caUGUUGaagGCGCGACCAUGu---CGCu -5'
11597 5' -52.5 NC_003085.1 + 6279 0.67 0.752007
Target:  5'- -cGCGAaguaCCGCGCggcGGUGgAGCGAc -3'
miRNA:   3'- caUGUUgaa-GGCGCGa--CCAUgUCGCU- -5'
11597 5' -52.5 NC_003085.1 + 25562 0.67 0.741243
Target:  5'- -cGCGACuUUCUGCGCgUGG-ACGGCu- -3'
miRNA:   3'- caUGUUG-AAGGCGCG-ACCaUGUCGcu -5'
11597 5' -52.5 NC_003085.1 + 21823 0.68 0.719374
Target:  5'- aUGCGGCgUCC-CGCUGG--CGGCGAg -3'
miRNA:   3'- cAUGUUGaAGGcGCGACCauGUCGCU- -5'
11597 5' -52.5 NC_003085.1 + 2783 0.68 0.674626
Target:  5'- -gGCAGCggCgGCGCUccaGGcgGCGGCGAa -3'
miRNA:   3'- caUGUUGaaGgCGCGA---CCa-UGUCGCU- -5'
11597 5' -52.5 NC_003085.1 + 10791 0.69 0.663301
Target:  5'- -cACcuCUUCCGCGCagcGGUGCgAGUGGa -3'
miRNA:   3'- caUGuuGAAGGCGCGa--CCAUG-UCGCU- -5'
11597 5' -52.5 NC_003085.1 + 22765 0.7 0.595093
Target:  5'- -gACGACgcccgCCGCGgUGGcgacgGCAGCGGc -3'
miRNA:   3'- caUGUUGaa---GGCGCgACCa----UGUCGCU- -5'
11597 5' -52.5 NC_003085.1 + 4114 0.7 0.572516
Target:  5'- aGUugGGCg-CCGCGCUGGgacucCAGCGc -3'
miRNA:   3'- -CAugUUGaaGGCGCGACCau---GUCGCu -5'
11597 5' -52.5 NC_003085.1 + 2161 0.71 0.539062
Target:  5'- -cAUGACgUCCGUGCUGGaAguGCGAa -3'
miRNA:   3'- caUGUUGaAGGCGCGACCaUguCGCU- -5'
11597 5' -52.5 NC_003085.1 + 1317 0.71 0.528054
Target:  5'- -cGCGACg-CCGCGCUGGaggagGCAGCc- -3'
miRNA:   3'- caUGUUGaaGGCGCGACCa----UGUCGcu -5'
11597 5' -52.5 NC_003085.1 + 19187 0.72 0.464014
Target:  5'- aGUGCGGCauucacgUCCGC-CUGGgGCGGCGGg -3'
miRNA:   3'- -CAUGUUGa------AGGCGcGACCaUGUCGCU- -5'
11597 5' -52.5 NC_003085.1 + 20063 0.73 0.433543
Target:  5'- ---gGGCUggCCGCGCUGGcGCAGCa- -3'
miRNA:   3'- caugUUGAa-GGCGCGACCaUGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.