Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11598 | 3' | -56.4 | NC_003085.1 | + | 40622 | 0.68 | 0.516953 |
Target: 5'- gCUGACGGcCGCUGCCgUccucgUCgccCUGACg -3' miRNA: 3'- -GGCUGCC-GCGACGGgA-----AGaaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 37848 | 0.68 | 0.506539 |
Target: 5'- cCUGGuaGCGCUGCCUgcgCUggCCGGCc -3' miRNA: 3'- -GGCUgcCGCGACGGGaa-GAaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 11574 | 0.69 | 0.461867 |
Target: 5'- gCCGuCGGCGUggUGCCCaccagcaccUCCGACg -3' miRNA: 3'- -GGCuGCCGCG--ACGGGaagaa----AGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 3103 | 0.7 | 0.407258 |
Target: 5'- gCCGACGGCGgaugaacUUGCCgccaUCUcgUCCGGCa -3' miRNA: 3'- -GGCUGCCGC-------GACGGga--AGAa-AGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 28295 | 0.7 | 0.381071 |
Target: 5'- -gGACGGCGCUguaGCCCUccacguaccagUCcaccUUCCGGCc -3' miRNA: 3'- ggCUGCCGCGA---CGGGA-----------AGa---AAGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 40375 | 0.7 | 0.381071 |
Target: 5'- cCCG-CGGCGCUgacGCCuCUggcgCUggCCGGCa -3' miRNA: 3'- -GGCuGCCGCGA---CGG-GAa---GAaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 10457 | 0.7 | 0.40818 |
Target: 5'- uCCG-CGGCGCUuuggcGCCCcUCggcuggCCGACc -3' miRNA: 3'- -GGCuGCCGCGA-----CGGGaAGaaa---GGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 22720 | 0.7 | 0.42691 |
Target: 5'- cCUGGCGGCgGCUGCCgagaagcacUCggcUCCGACa -3' miRNA: 3'- -GGCUGCCG-CGACGGga-------AGaa-AGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 44278 | 0.7 | 0.40818 |
Target: 5'- aCCcACGGCGCcGCCCUgCcUUCCG-Cg -3' miRNA: 3'- -GGcUGCCGCGaCGGGAaGaAAGGCuG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 19828 | 0.71 | 0.363678 |
Target: 5'- -aGGCGGCGgaUGUCCUUCUUcauccgcucaUCCGAg -3' miRNA: 3'- ggCUGCCGCg-ACGGGAAGAA----------AGGCUg -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 3871 | 0.71 | 0.346842 |
Target: 5'- gUCGACGGCGC-GCCCgccgUCUgUCgCGGu -3' miRNA: 3'- -GGCUGCCGCGaCGGGa---AGAaAG-GCUg -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 26591 | 0.72 | 0.314871 |
Target: 5'- uCCGGCGGCGacacGCUCUUCU--UCGACc -3' miRNA: 3'- -GGCUGCCGCga--CGGGAAGAaaGGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 25579 | 0.73 | 0.285178 |
Target: 5'- -gGACGGCuGCUGCCgUUCgcucacgccCCGACg -3' miRNA: 3'- ggCUGCCG-CGACGGgAAGaaa------GGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 49105 | 0.75 | 0.188255 |
Target: 5'- cCCGuuguCGGCGCUcaucccuugccGCCCUUCUUggCGGCg -3' miRNA: 3'- -GGCu---GCCGCGA-----------CGGGAAGAAagGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 26606 | 0.78 | 0.118188 |
Target: 5'- cCUGugGGCGCUGCcggacucuCCUUCgcugCCGACg -3' miRNA: 3'- -GGCugCCGCGACG--------GGAAGaaa-GGCUG- -5' |
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11598 | 3' | -56.4 | NC_003085.1 | + | 37905 | 1.03 | 0.001894 |
Target: 5'- gCCGACGGCGCUGCCCUUC-UUCCGACg -3' miRNA: 3'- -GGCUGCCGCGACGGGAAGaAAGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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