miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11598 5' -54.4 NC_003085.1 + 24295 0.66 0.738133
Target:  5'- ----cGAGGcgCGGaugaaugucgccgaGGCCaCCAugGCCa -3'
miRNA:   3'- acuaaCUCUuaGCC--------------CCGG-GGUugCGG- -5'
11598 5' -54.4 NC_003085.1 + 12224 0.67 0.653972
Target:  5'- ----aGGGA--UGGGGCUCCAAgGCUg -3'
miRNA:   3'- acuaaCUCUuaGCCCCGGGGUUgCGG- -5'
11598 5' -54.4 NC_003085.1 + 4110 0.67 0.676157
Target:  5'- ---cUG-GAGUUGGGcGCCgcgcugggacuCCAGCGCCg -3'
miRNA:   3'- acuaACuCUUAGCCC-CGG-----------GGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 11818 0.67 0.676157
Target:  5'- ----------cCGGGuGCCCCGACGCUg -3'
miRNA:   3'- acuaacucuuaGCCC-CGGGGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 9663 0.67 0.68719
Target:  5'- aGAUUGGGAc----GGCCgCCAACGUCg -3'
miRNA:   3'- aCUAACUCUuagccCCGG-GGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 13952 0.67 0.69817
Target:  5'- aGAagcgGAGcGUCGGacuGGCCCgaAGCGCCc -3'
miRNA:   3'- aCUaa--CUCuUAGCC---CCGGGg-UUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 48568 0.66 0.709085
Target:  5'- gGGUUGGca--CGGGauGCCCCucgGACGCCa -3'
miRNA:   3'- aCUAACUcuuaGCCC--CGGGG---UUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 22628 0.66 0.709085
Target:  5'- ----aGGGAAgCaGGGCaCCCAggaGCGCCg -3'
miRNA:   3'- acuaaCUCUUaGcCCCG-GGGU---UGCGG- -5'
11598 5' -54.4 NC_003085.1 + 32831 0.66 0.730669
Target:  5'- cGAcUGA---UUGGGGCCCgAgaggccgcGCGCCg -3'
miRNA:   3'- aCUaACUcuuAGCCCCGGGgU--------UGCGG- -5'
11598 5' -54.4 NC_003085.1 + 2140 0.68 0.642843
Target:  5'- ----cGAGGA-CGGcGGCCCC--CGCCu -3'
miRNA:   3'- acuaaCUCUUaGCC-CCGGGGuuGCGG- -5'
11598 5' -54.4 NC_003085.1 + 49097 0.68 0.591679
Target:  5'- cGAg-GAGGGgccccucgugcugaCGGGGCCCCggUGCUc -3'
miRNA:   3'- aCUaaCUCUUa-------------GCCCCGGGGuuGCGG- -5'
11598 5' -54.4 NC_003085.1 + 13291 0.69 0.576211
Target:  5'- ----cGAacAUCGGaGGCCCCAGCgaGCCc -3'
miRNA:   3'- acuaaCUcuUAGCC-CCGGGGUUG--CGG- -5'
11598 5' -54.4 NC_003085.1 + 35063 0.8 0.126602
Target:  5'- ---cUGGGAGUUGGGGCCCUAGCGg- -3'
miRNA:   3'- acuaACUCUUAGCCCCGGGGUUGCgg -5'
11598 5' -54.4 NC_003085.1 + 32889 0.73 0.356593
Target:  5'- uUGGUgGAGcAUCGGGGCCguccgccuUCGACGUCg -3'
miRNA:   3'- -ACUAaCUCuUAGCCCCGG--------GGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 2903 0.71 0.439618
Target:  5'- ----cGGGAAggaccucuaCGGGGCCCCAgucuggAUGCCg -3'
miRNA:   3'- acuaaCUCUUa--------GCCCCGGGGU------UGCGG- -5'
11598 5' -54.4 NC_003085.1 + 26542 0.71 0.439618
Target:  5'- cUGggUGGGAAcCGGaGGCUCggaGACGCCg -3'
miRNA:   3'- -ACuaACUCUUaGCC-CCGGGg--UUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 25730 0.7 0.479889
Target:  5'- ----cGAGGAUagGGGGCUCUAuCGCCg -3'
miRNA:   3'- acuaaCUCUUAg-CCCCGGGGUuGCGG- -5'
11598 5' -54.4 NC_003085.1 + 7336 0.7 0.490238
Target:  5'- cGGcUGAGGAcgCGGGcuacacgcGCCCCuggGCGCCg -3'
miRNA:   3'- aCUaACUCUUa-GCCC--------CGGGGu--UGCGG- -5'
11598 5' -54.4 NC_003085.1 + 16974 0.7 0.511239
Target:  5'- ----cGAGAugacgcUCcGGGCCCgCGACGCCg -3'
miRNA:   3'- acuaaCUCUu-----AGcCCCGGG-GUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 41176 0.69 0.554281
Target:  5'- ---cUGGGcaa-GGGGCUCCAGCGUCc -3'
miRNA:   3'- acuaACUCuuagCCCCGGGGUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.