miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11598 5' -54.4 NC_003085.1 + 26650 0.67 0.66508
Target:  5'- -----cGGAGUCGGGGCCgU--CGCCu -3'
miRNA:   3'- acuaacUCUUAGCCCCGGgGuuGCGG- -5'
11598 5' -54.4 NC_003085.1 + 27640 0.66 0.741316
Target:  5'- cGAcUUGAuGAGcUCGGcGGCCuUgGGCGCCa -3'
miRNA:   3'- aCU-AACU-CUU-AGCC-CCGG-GgUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 32831 0.66 0.730669
Target:  5'- cGAcUGA---UUGGGGCCCgAgaggccgcGCGCCg -3'
miRNA:   3'- aCUaACUcuuAGCCCCGGGgU--------UGCGG- -5'
11598 5' -54.4 NC_003085.1 + 32889 0.73 0.356593
Target:  5'- uUGGUgGAGcAUCGGGGCCguccgccuUCGACGUCg -3'
miRNA:   3'- -ACUAaCUCuUAGCCCCGG--------GGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 35063 0.8 0.126602
Target:  5'- ---cUGGGAGUUGGGGCCCUAGCGg- -3'
miRNA:   3'- acuaACUCUUAGCCCCGGGGUUGCgg -5'
11598 5' -54.4 NC_003085.1 + 36161 0.68 0.642843
Target:  5'- gUGGUUGaAGGGcucgcUGGGGCCuCCGAuguuCGCCg -3'
miRNA:   3'- -ACUAAC-UCUUa----GCCCCGG-GGUU----GCGG- -5'
11598 5' -54.4 NC_003085.1 + 36841 0.68 0.609438
Target:  5'- aGAUUGucAGAAUccagcgccCGGGGCgCCAcgcGCGUCa -3'
miRNA:   3'- aCUAAC--UCUUA--------GCCCCGgGGU---UGCGG- -5'
11598 5' -54.4 NC_003085.1 + 37907 0.66 0.75185
Target:  5'- gGAcgGuGcGUUGGcgcaGGCCCCGGCGCUc -3'
miRNA:   3'- aCUaaCuCuUAGCC----CCGGGGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 37943 1.13 0.000581
Target:  5'- uUGAUUGAGAAUCGGGGCCCCAACGCCa -3'
miRNA:   3'- -ACUAACUCUUAGCCCCGGGGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 41176 0.69 0.554281
Target:  5'- ---cUGGGcaa-GGGGCUCCAGCGUCc -3'
miRNA:   3'- acuaACUCuuagCCCCGGGGUUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 42031 0.67 0.675051
Target:  5'- gGAUgGAGAcgCGcgucuucccgggaGGGCCCCAGucggacucgUGCCa -3'
miRNA:   3'- aCUAaCUCUuaGC-------------CCCGGGGUU---------GCGG- -5'
11598 5' -54.4 NC_003085.1 + 48568 0.66 0.709085
Target:  5'- gGGUUGGca--CGGGauGCCCCucgGACGCCa -3'
miRNA:   3'- aCUAACUcuuaGCCC--CGGGG---UUGCGG- -5'
11598 5' -54.4 NC_003085.1 + 49097 0.68 0.591679
Target:  5'- cGAg-GAGGGgccccucgugcugaCGGGGCCCCggUGCUc -3'
miRNA:   3'- aCUaaCUCUUa-------------GCCCCGGGGuuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.