miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
116 3' -53.3 AC_000006.1 + 25436 0.66 0.719662
Target:  5'- uCAUCGCCaccaUgAGcAAGGAGAuucCCACCCc -3'
miRNA:   3'- -GUAGUGGg---AgUC-UUCUUCU---GGUGGGc -5'
116 3' -53.3 AC_000006.1 + 5176 0.66 0.719662
Target:  5'- --cCACCCcuUCAccgugcGGAGACCACCCu -3'
miRNA:   3'- guaGUGGG--AGUcuu---CUUCUGGUGGGc -5'
116 3' -53.3 AC_000006.1 + 7075 0.66 0.719662
Target:  5'- --aCGCCCUCcccguGGAGAAGGgCugCUGu -3'
miRNA:   3'- guaGUGGGAGu----CUUCUUCUgGugGGC- -5'
116 3' -53.3 AC_000006.1 + 27373 0.66 0.708445
Target:  5'- uGUUAUCCUUGGuAGggGGCCACaagCCa -3'
miRNA:   3'- gUAGUGGGAGUCuUCuuCUGGUG---GGc -5'
116 3' -53.3 AC_000006.1 + 130 0.67 0.651388
Target:  5'- gGUCGCCg-CGGAGGcguGGCCuaGCCCGg -3'
miRNA:   3'- gUAGUGGgaGUCUUCuu-CUGG--UGGGC- -5'
116 3' -53.3 AC_000006.1 + 15378 0.67 0.61682
Target:  5'- gAUCGCCCaggcgccauUCGGAGcacgcccgccauGggGcGCCGCCCGa -3'
miRNA:   3'- gUAGUGGG---------AGUCUU------------CuuC-UGGUGGGC- -5'
116 3' -53.3 AC_000006.1 + 2860 0.68 0.593828
Target:  5'- gCAUUGCCCUCGGuAGA-GACU-CCCa -3'
miRNA:   3'- -GUAGUGGGAGUCuUCUuCUGGuGGGc -5'
116 3' -53.3 AC_000006.1 + 24134 0.68 0.581239
Target:  5'- gCGUCugCCUCAGcgcucggGGGAGGACgAUCuCGg -3'
miRNA:   3'- -GUAGugGGAGUC-------UUCUUCUGgUGG-GC- -5'
116 3' -53.3 AC_000006.1 + 18184 0.68 0.548349
Target:  5'- --gCGCCCUUGGggGcAAGGCUguuguaagccguGCCCGa -3'
miRNA:   3'- guaGUGGGAGUCuuC-UUCUGG------------UGGGC- -5'
116 3' -53.3 AC_000006.1 + 10770 0.69 0.510573
Target:  5'- --aCACCCccgcgugcagcugCAGAAGGAcGugCGCCCGg -3'
miRNA:   3'- guaGUGGGa------------GUCUUCUU-CugGUGGGC- -5'
116 3' -53.3 AC_000006.1 + 12613 0.71 0.391511
Target:  5'- --aCACCgaCAGucuGAGGGCCACCCu -3'
miRNA:   3'- guaGUGGgaGUCuu-CUUCUGGUGGGc -5'
116 3' -53.3 AC_000006.1 + 15719 0.74 0.25295
Target:  5'- uCGUCGCCC-CGG-AGAuuuacGGACCACCCc -3'
miRNA:   3'- -GUAGUGGGaGUCuUCU-----UCUGGUGGGc -5'
116 3' -53.3 AC_000006.1 + 22561 0.75 0.239598
Target:  5'- aCGUC-CUCUCGGAAGAcccGGAgcCCACCCGc -3'
miRNA:   3'- -GUAGuGGGAGUCUUCU---UCU--GGUGGGC- -5'
116 3' -53.3 AC_000006.1 + 4774 0.76 0.20305
Target:  5'- cCGUCGuCCCggaGGAGGggGGCCACCuCGu -3'
miRNA:   3'- -GUAGU-GGGag-UCUUCuuCUGGUGG-GC- -5'
116 3' -53.3 AC_000006.1 + 1222 1.08 0.001035
Target:  5'- uCAUCACCCUCAGAAGAAGACCACCCGu -3'
miRNA:   3'- -GUAGUGGGAGUCUUCUUCUGGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.