miRNA: 3'- -CAGUCCGCU----UUG-------------CGGGGACGU---------UCACG- -5'
miRNA: 3'- cagUCCGCU-------------UUGCGGGg---ACGUUCACg -5'
miRNA: 3'- -CAGUCCGCUUUgCG-GGGACGuu---CACG- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 116 | 5' | -55.2 | AC_000006.1 | + | 30533 | 0.69 | 0.40116 |
|
Target: 5'- aGUCGGGCGAgaccAACggcugcauccacuGCUCCUGCGaaagccccgAGUGUa -3' miRNA: 3'- -CAGUCCGCU----UUG-------------CGGGGACGU---------UCACG- -5' |
|||||||
| 116 | 5' | -55.2 | AC_000006.1 | + | 30564 | 0.68 | 0.420608 |
|
Target: 5'- --uGGGUGAugacuaugggguuGACGCCCaccaUGCAGGUGa -3' miRNA: 3'- cagUCCGCU-------------UUGCGGGg---ACGUUCACg -5' |
|||||||
| 116 | 5' | -55.2 | AC_000006.1 | + | 32819 | 0.79 | 0.088333 |
|
Target: 5'- uGUCGGGCGGGAgGCaCCCUGCuggccGUGUg -3' miRNA: 3'- -CAGUCCGCUUUgCG-GGGACGuu---CACG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home