Results 81 - 100 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11600 | 3' | -53 | NC_003085.1 | + | 24474 | 0.69 | 0.603694 |
Target: 5'- cGCAgGuggagGACAugGCGGCggUgGCCa -3' miRNA: 3'- aCGUgUuga--CUGUugCGCCGa-AgCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 27495 | 0.69 | 0.648868 |
Target: 5'- cUGUGgAACUgGACGuACGaCGGCggCGCCg -3' miRNA: 3'- -ACGUgUUGA-CUGU-UGC-GCCGaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 27163 | 0.69 | 0.614974 |
Target: 5'- gGgACcaGACgGGCGACGCuGGCUUCGgCg -3' miRNA: 3'- aCgUG--UUGaCUGUUGCG-CCGAAGCgG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 25373 | 0.69 | 0.62627 |
Target: 5'- gGCAC-GCcGACGGCG-GGCUUCaCCg -3' miRNA: 3'- aCGUGuUGaCUGUUGCgCCGAAGcGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 10718 | 0.69 | 0.614974 |
Target: 5'- gGCACuGGCUGACGGCaaGCGGa--CGCUg -3' miRNA: 3'- aCGUG-UUGACUGUUG--CGCCgaaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 10985 | 0.69 | 0.637572 |
Target: 5'- gGCGaGACguUGGgGACGCGGCaUCGCg -3' miRNA: 3'- aCGUgUUG--ACUgUUGCGCCGaAGCGg -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 30010 | 0.69 | 0.647739 |
Target: 5'- cUGgGCGGCcuUGGCGAcgucgucCGCGGCUUCcaggGCCa -3' miRNA: 3'- -ACgUGUUG--ACUGUU-------GCGCCGAAG----CGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 48137 | 0.69 | 0.648868 |
Target: 5'- aGuCugGGCUGccuccucCAGCGCGGCgUCGCg -3' miRNA: 3'- aC-GugUUGACu------GUUGCGCCGaAGCGg -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 4205 | 0.69 | 0.648868 |
Target: 5'- gGaCGCcGCUGAC-GCGCGGCggguuaCGCUg -3' miRNA: 3'- aC-GUGuUGACUGuUGCGCCGaa----GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 20999 | 0.69 | 0.648868 |
Target: 5'- aUGCGCGAgUu-CAACGCGcGCUUCGaCg -3' miRNA: 3'- -ACGUGUUgAcuGUUGCGC-CGAAGCgG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 40991 | 0.7 | 0.58122 |
Target: 5'- gGCAagGGCUGGCccaGCGGCgucgucaUCGCCg -3' miRNA: 3'- aCGUg-UUGACUGuugCGCCGa------AGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 1049 | 0.7 | 0.547865 |
Target: 5'- gGCGCcgAACUGcCcGCGUGGCUcCGCUg -3' miRNA: 3'- aCGUG--UUGACuGuUGCGCCGAaGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 21259 | 0.7 | 0.547865 |
Target: 5'- cUGgACGACgGACAAgGUGGUgccgCGCCc -3' miRNA: 3'- -ACgUGUUGaCUGUUgCGCCGaa--GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 15158 | 0.7 | 0.537971 |
Target: 5'- cGCACuacugcccccucugcGCUGACGGCcCGGCUgagccggugCGCCa -3' miRNA: 3'- aCGUGu--------------UGACUGUUGcGCCGAa--------GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 17995 | 0.7 | 0.536875 |
Target: 5'- gGCACGgaGCUgcGAgAGCGCGGaCUggCGCCc -3' miRNA: 3'- aCGUGU--UGA--CUgUUGCGCC-GAa-GCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 46598 | 0.7 | 0.547865 |
Target: 5'- cUGCGCGAUUGGuCGGCaUGGCUcagcccuccUCGCCc -3' miRNA: 3'- -ACGUGUUGACU-GUUGcGCCGA---------AGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 47902 | 0.7 | 0.570046 |
Target: 5'- cGCACuGCaGGCGACGCgcacGGCcUCGCg -3' miRNA: 3'- aCGUGuUGaCUGUUGCG----CCGaAGCGg -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 7815 | 0.7 | 0.58122 |
Target: 5'- gGCACAGCaccagGugAGCgGCGGCcaaGCCu -3' miRNA: 3'- aCGUGUUGa----CugUUG-CGCCGaagCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 47027 | 0.7 | 0.547865 |
Target: 5'- gGCGCGuuGCaggguagGGCAGCGCGuCUUCGUCa -3' miRNA: 3'- aCGUGU--UGa------CUGUUGCGCcGAAGCGG- -5' |
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11600 | 3' | -53 | NC_003085.1 | + | 12040 | 0.7 | 0.536875 |
Target: 5'- cUGCGCGACUucguGCGCcGCUUCGCg -3' miRNA: 3'- -ACGUGUUGAcuguUGCGcCGAAGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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