miRNA display CGI


Results 81 - 100 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 8536 0.68 0.660148
Target:  5'- gGCACcuCUcGGC-GCGCGGCgagcUCGUCa -3'
miRNA:   3'- aCGUGuuGA-CUGuUGCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 3771 0.68 0.660148
Target:  5'- cGCAguGCuccgUGACu-CGCGGCUgacggaCGCCg -3'
miRNA:   3'- aCGUguUG----ACUGuuGCGCCGAa-----GCGG- -5'
11600 3' -53 NC_003085.1 + 20926 0.68 0.693777
Target:  5'- cGUagGCGAC-GACGcCGCGGaUUCGCCc -3'
miRNA:   3'- aCG--UGUUGaCUGUuGCGCCgAAGCGG- -5'
11600 3' -53 NC_003085.1 + 29485 0.67 0.737679
Target:  5'- cGUACAguccuACUGACuaccuuGGCGCGGCcauggGCCa -3'
miRNA:   3'- aCGUGU-----UGACUG------UUGCGCCGaag--CGG- -5'
11600 3' -53 NC_003085.1 + 28507 0.67 0.757953
Target:  5'- cGCGCcauucaggcggugGACgcgucagGGCGAaucCGCGGCgucgUCGCCu -3'
miRNA:   3'- aCGUG-------------UUGa------CUGUU---GCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 29168 0.67 0.737679
Target:  5'- gGCGCGuugGGCAcgGCcuugGGCUUCGCCu -3'
miRNA:   3'- aCGUGUugaCUGUugCG----CCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 45741 0.67 0.726841
Target:  5'- cGguCAuGCUGACGccucGCGUGGCacgUCGCg -3'
miRNA:   3'- aCguGU-UGACUGU----UGCGCCGa--AGCGg -5'
11600 3' -53 NC_003085.1 + 25427 0.67 0.72684
Target:  5'- gGCaACGGCUGAgCAGCacugaGCGGCg--GCCg -3'
miRNA:   3'- aCG-UGUUGACU-GUUG-----CGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 35180 0.67 0.726841
Target:  5'- cUGCGCGGCgcuUGACGGCaGCaGCcUgGCCg -3'
miRNA:   3'- -ACGUGUUG---ACUGUUG-CGcCGaAgCGG- -5'
11600 3' -53 NC_003085.1 + 3081 0.67 0.726841
Target:  5'- cGCACAGCgUGACGAgccgcaggcCGaCGGCggaugaacUUGCCg -3'
miRNA:   3'- aCGUGUUG-ACUGUU---------GC-GCCGa-------AGCGG- -5'
11600 3' -53 NC_003085.1 + 13628 0.67 0.748405
Target:  5'- gGCACGACUGAgu-CGCaGGCgcUCGgCg -3'
miRNA:   3'- aCGUGUUGACUguuGCG-CCGa-AGCgG- -5'
11600 3' -53 NC_003085.1 + 15211 0.67 0.748405
Target:  5'- cGCGCcGCggaagugGGCGAgGUGGaCUUgCGCCa -3'
miRNA:   3'- aCGUGuUGa------CUGUUgCGCC-GAA-GCGG- -5'
11600 3' -53 NC_003085.1 + 42520 0.67 0.748405
Target:  5'- cGCACGccacCUG-CGugGCcucccGCUUCGCCu -3'
miRNA:   3'- aCGUGUu---GACuGUugCGc----CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 16083 0.67 0.759007
Target:  5'- uUGCgACAgugGCUGAgcGCGCGGUgucuguccCGCCa -3'
miRNA:   3'- -ACG-UGU---UGACUguUGCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 23124 0.67 0.725751
Target:  5'- gGCGCAGCaccgcaaGACGGCGCagagcuucgagcaGGUggugUCGCCc -3'
miRNA:   3'- aCGUGUUGa------CUGUUGCG-------------CCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 32141 0.67 0.759007
Target:  5'- gGgGCGGCUGGUGGCGCGGUggguuacggCGUCg -3'
miRNA:   3'- aCgUGUUGACUGUUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 48848 0.67 0.759007
Target:  5'- aGCACAACccGccguaggccGCGACG-GGCUugcagUCGCCg -3'
miRNA:   3'- aCGUGUUGa-C---------UGUUGCgCCGA-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 33896 0.67 0.737679
Target:  5'- gGCACGACcagUGuCGucgUGCGcGUUUCGCCg -3'
miRNA:   3'- aCGUGUUG---ACuGUu--GCGC-CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 28857 0.67 0.72684
Target:  5'- cGCGCcGCccGACuucCGCGGCgcUGCCg -3'
miRNA:   3'- aCGUGuUGa-CUGuu-GCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 5765 0.67 0.737679
Target:  5'- aGCGCAucccccUUGAgCGGCGCGuGCUcuaCGCCg -3'
miRNA:   3'- aCGUGUu-----GACU-GUUGCGC-CGAa--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.