miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 20197 0.79 0.175662
Target:  5'- gUGCACGACUGggccagccACGACGCGGa--CGCCu -3'
miRNA:   3'- -ACGUGUUGAC--------UGUUGCGCCgaaGCGG- -5'
11600 3' -53 NC_003085.1 + 20926 0.68 0.693777
Target:  5'- cGUagGCGAC-GACGcCGCGGaUUCGCCc -3'
miRNA:   3'- aCG--UGUUGaCUGUuGCGCCgAAGCGG- -5'
11600 3' -53 NC_003085.1 + 20999 0.69 0.648868
Target:  5'- aUGCGCGAgUu-CAACGCGcGCUUCGaCg -3'
miRNA:   3'- -ACGUGUUgAcuGUUGCGC-CGAAGCgG- -5'
11600 3' -53 NC_003085.1 + 21259 0.7 0.547865
Target:  5'- cUGgACGACgGACAAgGUGGUgccgCGCCc -3'
miRNA:   3'- -ACgUGUUGaCUGUUgCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 21684 0.68 0.6714
Target:  5'- aGCGCcuCcagGACGAgGUGGCccgcUUCGCCu -3'
miRNA:   3'- aCGUGuuGa--CUGUUgCGCCG----AAGCGG- -5'
11600 3' -53 NC_003085.1 + 21796 0.7 0.566703
Target:  5'- aGCACGucgccgccguagucGgUGGCGAUGCGGCguccCGCUg -3'
miRNA:   3'- aCGUGU--------------UgACUGUUGCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 22939 0.69 0.603694
Target:  5'- gGcCGCGuc-GACGGCGCGGCgaaGCCg -3'
miRNA:   3'- aC-GUGUugaCUGUUGCGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 23124 0.67 0.725751
Target:  5'- gGCGCAGCaccgcaaGACGGCGCagagcuucgagcaGGUggugUCGCCc -3'
miRNA:   3'- aCGUGUUGa------CUGUUGCG-------------CCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 23405 0.66 0.789942
Target:  5'- aGCA-GGCUGAgCAGCGagucaugcaGcGCUUCGCCc -3'
miRNA:   3'- aCGUgUUGACU-GUUGCg--------C-CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 23430 0.68 0.660148
Target:  5'- cUGCuccuuCAACUGcUGGCGCaGCgUCGCCa -3'
miRNA:   3'- -ACGu----GUUGACuGUUGCGcCGaAGCGG- -5'
11600 3' -53 NC_003085.1 + 23557 0.69 0.648868
Target:  5'- gGCGCuGCU--CGGCGCGGCguugcgaugUCGCUg -3'
miRNA:   3'- aCGUGuUGAcuGUUGCGCCGa--------AGCGG- -5'
11600 3' -53 NC_003085.1 + 23648 0.68 0.660148
Target:  5'- aGCGCgAGCaGGCcGCGCaGGCgaaCGCCg -3'
miRNA:   3'- aCGUG-UUGaCUGuUGCG-CCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 24204 0.67 0.715902
Target:  5'- aGUACGcGCUGAagcaguACGCGGUgcccgUCGUCa -3'
miRNA:   3'- aCGUGU-UGACUgu----UGCGCCGa----AGCGG- -5'
11600 3' -53 NC_003085.1 + 24266 0.71 0.493761
Target:  5'- cGUACuGCUcGGCGACGuUGGCgcucaUCGCCa -3'
miRNA:   3'- aCGUGuUGA-CUGUUGC-GCCGa----AGCGG- -5'
11600 3' -53 NC_003085.1 + 24277 0.75 0.324014
Target:  5'- gGCGCAACUcGACcugcucgaGGCGCGGaugaaugUCGCCg -3'
miRNA:   3'- aCGUGUUGA-CUG--------UUGCGCCga-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 24438 0.67 0.715903
Target:  5'- cGCGCGGgUGAUggUGCccaGCggCGCCu -3'
miRNA:   3'- aCGUGUUgACUGuuGCGc--CGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 24474 0.69 0.603694
Target:  5'- cGCAgGuggagGACAugGCGGCggUgGCCa -3'
miRNA:   3'- aCGUgUuga--CUGUugCGCCGa-AgCGG- -5'
11600 3' -53 NC_003085.1 + 24701 0.77 0.230987
Target:  5'- gUGCugGAC-GGCGGCaucgGCGGCUUCGCg -3'
miRNA:   3'- -ACGugUUGaCUGUUG----CGCCGAAGCGg -5'
11600 3' -53 NC_003085.1 + 25373 0.69 0.62627
Target:  5'- gGCAC-GCcGACGGCG-GGCUUCaCCg -3'
miRNA:   3'- aCGUGuUGaCUGUUGCgCCGAAGcGG- -5'
11600 3' -53 NC_003085.1 + 25427 0.67 0.72684
Target:  5'- gGCaACGGCUGAgCAGCacugaGCGGCg--GCCg -3'
miRNA:   3'- aCG-UGUUGACU-GUUG-----CGCCGaagCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.