miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 33367 0.66 0.799923
Target:  5'- gGCGgGACaGACAcCGCGcGCUcaGCCa -3'
miRNA:   3'- aCGUgUUGaCUGUuGCGC-CGAagCGG- -5'
11600 3' -53 NC_003085.1 + 32141 0.67 0.759007
Target:  5'- gGgGCGGCUGGUGGCGCGGUggguuacggCGUCg -3'
miRNA:   3'- aCgUGUUGACUGUUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 30010 0.69 0.647739
Target:  5'- cUGgGCGGCcuUGGCGAcgucgucCGCGGCUUCcaggGCCa -3'
miRNA:   3'- -ACgUGUUG--ACUGUU-------GCGCCGAAG----CGG- -5'
11600 3' -53 NC_003085.1 + 29485 0.67 0.737679
Target:  5'- cGUACAguccuACUGACuaccuuGGCGCGGCcauggGCCa -3'
miRNA:   3'- aCGUGU-----UGACUG------UUGCGCCGaag--CGG- -5'
11600 3' -53 NC_003085.1 + 29191 0.66 0.779788
Target:  5'- aGCGCcGC-GAgGACGCGGagcgcacgCGCCu -3'
miRNA:   3'- aCGUGuUGaCUgUUGCGCCgaa-----GCGG- -5'
11600 3' -53 NC_003085.1 + 29168 0.67 0.737679
Target:  5'- gGCGCGuugGGCAcgGCcuugGGCUUCGCCu -3'
miRNA:   3'- aCGUGUugaCUGUugCG----CCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 28857 0.67 0.72684
Target:  5'- cGCGCcGCccGACuucCGCGGCgcUGCCg -3'
miRNA:   3'- aCGUGuUGa-CUGuu-GCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 28507 0.67 0.757953
Target:  5'- cGCGCcauucaggcggugGACgcgucagGGCGAaucCGCGGCgucgUCGCCu -3'
miRNA:   3'- aCGUG-------------UUGa------CUGUU---GCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 27636 0.68 0.682615
Target:  5'- aGCGCGACuUGAUgAGCucgGCGGCcuugggCGCCa -3'
miRNA:   3'- aCGUGUUG-ACUG-UUG---CGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 27495 0.69 0.648868
Target:  5'- cUGUGgAACUgGACGuACGaCGGCggCGCCg -3'
miRNA:   3'- -ACGUgUUGA-CUGU-UGC-GCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 27163 0.69 0.614974
Target:  5'- gGgACcaGACgGGCGACGCuGGCUUCGgCg -3'
miRNA:   3'- aCgUG--UUGaCUGUUGCG-CCGAAGCgG- -5'
11600 3' -53 NC_003085.1 + 27060 0.67 0.715902
Target:  5'- aGCGCcaaguCUG---GCGCGGCgaaUCGCCu -3'
miRNA:   3'- aCGUGuu---GACuguUGCGCCGa--AGCGG- -5'
11600 3' -53 NC_003085.1 + 26716 0.76 0.285251
Target:  5'- cGCGCAggGCggUGACGGCGCGGCgccggUGCUg -3'
miRNA:   3'- aCGUGU--UG--ACUGUUGCGCCGaa---GCGG- -5'
11600 3' -53 NC_003085.1 + 26634 0.66 0.788935
Target:  5'- cUGC-CGACgUGGCAAucggaguCGgGGCcgUCGCCu -3'
miRNA:   3'- -ACGuGUUG-ACUGUU-------GCgCCGa-AGCGG- -5'
11600 3' -53 NC_003085.1 + 26500 0.69 0.614974
Target:  5'- gGCA-GACUGGgcCGGCucgucCGGCUUCGCCg -3'
miRNA:   3'- aCGUgUUGACU--GUUGc----GCCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 26206 0.69 0.648868
Target:  5'- cUGCGCcuuguGCgcgGGCGGCGCGGUgcgaagCGCg -3'
miRNA:   3'- -ACGUGu----UGa--CUGUUGCGCCGaa----GCGg -5'
11600 3' -53 NC_003085.1 + 25780 0.69 0.62627
Target:  5'- cUGCGCGggcccgcuGCgugGACGccuGgGCGGCgUUCGCCu -3'
miRNA:   3'- -ACGUGU--------UGa--CUGU---UgCGCCG-AAGCGG- -5'
11600 3' -53 NC_003085.1 + 25615 0.67 0.715902
Target:  5'- aGCGCGACgaggaggaGACGACGaaGGCcgggCGCCc -3'
miRNA:   3'- aCGUGUUGa-------CUGUUGCg-CCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 25427 0.67 0.72684
Target:  5'- gGCaACGGCUGAgCAGCacugaGCGGCg--GCCg -3'
miRNA:   3'- aCG-UGUUGACU-GUUG-----CGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 25373 0.69 0.62627
Target:  5'- gGCAC-GCcGACGGCG-GGCUUCaCCg -3'
miRNA:   3'- aCGUGuUGaCUGUUGCgCCGAAGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.