miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 10985 0.69 0.637572
Target:  5'- gGCGaGACguUGGgGACGCGGCaUCGCg -3'
miRNA:   3'- aCGUgUUG--ACUgUUGCGCCGaAGCGg -5'
11600 3' -53 NC_003085.1 + 30010 0.69 0.647739
Target:  5'- cUGgGCGGCcuUGGCGAcgucgucCGCGGCUUCcaggGCCa -3'
miRNA:   3'- -ACgUGUUG--ACUGUU-------GCGCCGAAG----CGG- -5'
11600 3' -53 NC_003085.1 + 48137 0.69 0.648868
Target:  5'- aGuCugGGCUGccuccucCAGCGCGGCgUCGCg -3'
miRNA:   3'- aC-GugUUGACu------GUUGCGCCGaAGCGg -5'
11600 3' -53 NC_003085.1 + 4205 0.69 0.648868
Target:  5'- gGaCGCcGCUGAC-GCGCGGCggguuaCGCUg -3'
miRNA:   3'- aC-GUGuUGACUGuUGCGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 20999 0.69 0.648868
Target:  5'- aUGCGCGAgUu-CAACGCGcGCUUCGaCg -3'
miRNA:   3'- -ACGUGUUgAcuGUUGCGC-CGAAGCgG- -5'
11600 3' -53 NC_003085.1 + 23557 0.69 0.648868
Target:  5'- gGCGCuGCU--CGGCGCGGCguugcgaugUCGCUg -3'
miRNA:   3'- aCGUGuUGAcuGUUGCGCCGa--------AGCGG- -5'
11600 3' -53 NC_003085.1 + 12599 0.69 0.614974
Target:  5'- gGUcCGACUGACGcGCGUGGCgccccgggCGCUg -3'
miRNA:   3'- aCGuGUUGACUGU-UGCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 10718 0.69 0.614974
Target:  5'- gGCACuGGCUGACGGCaaGCGGa--CGCUg -3'
miRNA:   3'- aCGUG-UUGACUGUUG--CGCCgaaGCGG- -5'
11600 3' -53 NC_003085.1 + 15158 0.7 0.537971
Target:  5'- cGCACuacugcccccucugcGCUGACGGCcCGGCUgagccggugCGCCa -3'
miRNA:   3'- aCGUGu--------------UGACUGUUGcGCCGAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 21259 0.7 0.547865
Target:  5'- cUGgACGACgGACAAgGUGGUgccgCGCCc -3'
miRNA:   3'- -ACgUGUUGaCUGUUgCGCCGaa--GCGG- -5'
11600 3' -53 NC_003085.1 + 1049 0.7 0.547865
Target:  5'- gGCGCcgAACUGcCcGCGUGGCUcCGCUg -3'
miRNA:   3'- aCGUG--UUGACuGuUGCGCCGAaGCGG- -5'
11600 3' -53 NC_003085.1 + 46598 0.7 0.547865
Target:  5'- cUGCGCGAUUGGuCGGCaUGGCUcagcccuccUCGCCc -3'
miRNA:   3'- -ACGUGUUGACU-GUUGcGCCGA---------AGCGG- -5'
11600 3' -53 NC_003085.1 + 47027 0.7 0.547865
Target:  5'- gGCGCGuuGCaggguagGGCAGCGCGuCUUCGUCa -3'
miRNA:   3'- aCGUGU--UGa------CUGUUGCGCcGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 40991 0.7 0.58122
Target:  5'- gGCAagGGCUGGCccaGCGGCgucgucaUCGCCg -3'
miRNA:   3'- aCGUg-UUGACUGuugCGCCGa------AGCGG- -5'
11600 3' -53 NC_003085.1 + 24474 0.69 0.603694
Target:  5'- cGCAgGuggagGACAugGCGGCggUgGCCa -3'
miRNA:   3'- aCGUgUuga--CUGUugCGCCGa-AgCGG- -5'
11600 3' -53 NC_003085.1 + 22939 0.69 0.603694
Target:  5'- gGcCGCGuc-GACGGCGCGGCgaaGCCg -3'
miRNA:   3'- aC-GUGUugaCUGUUGCGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 33557 0.81 0.12507
Target:  5'- cGCACGACgGACcauGCGCGGCgacaugUUGCCg -3'
miRNA:   3'- aCGUGUUGaCUGu--UGCGCCGa-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 40288 0.66 0.819319
Target:  5'- cGCGCcgacccacaGACUcagGACuGCGCGGCggcgagcucCGCCa -3'
miRNA:   3'- aCGUG---------UUGA---CUGuUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 34341 0.66 0.819319
Target:  5'- cGCACcAC--GCGGCGCGGCgcuccauccgcUCGUCg -3'
miRNA:   3'- aCGUGuUGacUGUUGCGCCGa----------AGCGG- -5'
11600 3' -53 NC_003085.1 + 9024 0.66 0.819319
Target:  5'- cGUAgGGCUgGACGGCGgcaGGCagcgCGCCu -3'
miRNA:   3'- aCGUgUUGA-CUGUUGCg--CCGaa--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.