miRNA display CGI


Results 121 - 138 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 40288 0.66 0.819319
Target:  5'- cGCGCcgacccacaGACUcagGACuGCGCGGCggcgagcucCGCCa -3'
miRNA:   3'- aCGUG---------UUGA---CUGuUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 2635 0.66 0.779788
Target:  5'- cGuCGCAACUcGGCGGCGaGGUgaUGCCg -3'
miRNA:   3'- aC-GUGUUGA-CUGUUGCgCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 8836 0.67 0.759007
Target:  5'- aGgGCGACgagGACGGCaGCGGC--CGUCa -3'
miRNA:   3'- aCgUGUUGa--CUGUUG-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 34177 0.67 0.748405
Target:  5'- gGC-CAGCaUGACGcggGCGCGGCgggugagcUCgGCCg -3'
miRNA:   3'- aCGuGUUG-ACUGU---UGCGCCGa-------AG-CGG- -5'
11600 3' -53 NC_003085.1 + 34270 0.68 0.660148
Target:  5'- gGCGCGgcGCUGGCGcAC-CGGCUcaGCCg -3'
miRNA:   3'- aCGUGU--UGACUGU-UGcGCCGAagCGG- -5'
11600 3' -53 NC_003085.1 + 3435 0.68 0.671401
Target:  5'- aUGCGCAgagcccACUGACAugcccuGCcCGGCcgUCGUCa -3'
miRNA:   3'- -ACGUGU------UGACUGU------UGcGCCGa-AGCGG- -5'
11600 3' -53 NC_003085.1 + 27636 0.68 0.682615
Target:  5'- aGCGCGACuUGAUgAGCucgGCGGCcuugggCGCCa -3'
miRNA:   3'- aCGUGUUG-ACUG-UUG---CGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 48995 0.68 0.693777
Target:  5'- gUGgGCAcCUGcaACAGCGcCGGCUggcccuccgCGCCg -3'
miRNA:   3'- -ACgUGUuGAC--UGUUGC-GCCGAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 20926 0.68 0.693777
Target:  5'- cGUagGCGAC-GACGcCGCGGaUUCGCCc -3'
miRNA:   3'- aCG--UGUUGaCUGUuGCGCCgAAGCGG- -5'
11600 3' -53 NC_003085.1 + 24438 0.67 0.715903
Target:  5'- cGCGCGGgUGAUggUGCccaGCggCGCCu -3'
miRNA:   3'- aCGUGUUgACUGuuGCGc--CGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 3081 0.67 0.726841
Target:  5'- cGCACAGCgUGACGAgccgcaggcCGaCGGCggaugaacUUGCCg -3'
miRNA:   3'- aCGUGUUG-ACUGUU---------GC-GCCGa-------AGCGG- -5'
11600 3' -53 NC_003085.1 + 35180 0.67 0.726841
Target:  5'- cUGCGCGGCgcuUGACGGCaGCaGCcUgGCCg -3'
miRNA:   3'- -ACGUGUUG---ACUGUUG-CGcCGaAgCGG- -5'
11600 3' -53 NC_003085.1 + 45741 0.67 0.726841
Target:  5'- cGguCAuGCUGACGccucGCGUGGCacgUCGCg -3'
miRNA:   3'- aCguGU-UGACUGU----UGCGCCGa--AGCGg -5'
11600 3' -53 NC_003085.1 + 29168 0.67 0.737679
Target:  5'- gGCGCGuugGGCAcgGCcuugGGCUUCGCCu -3'
miRNA:   3'- aCGUGUugaCUGUugCG----CCGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 40879 0.67 0.737679
Target:  5'- cGCGCucg-GACGACgGCGGCa-UGCCa -3'
miRNA:   3'- aCGUGuugaCUGUUG-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 45582 0.67 0.737679
Target:  5'- gUGCcaccGCGACaGACGGCG-GGCg-CGCCg -3'
miRNA:   3'- -ACG----UGUUGaCUGUUGCgCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 12501 0.67 0.748405
Target:  5'- gGCGcCAACaUGGCccCGCGGCccUGCCu -3'
miRNA:   3'- aCGU-GUUG-ACUGuuGCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 46491 0.66 0.819319
Target:  5'- cUGCGC-GCUcGACGAaaccacCGCGcGCUUgaCGCCg -3'
miRNA:   3'- -ACGUGuUGA-CUGUU------GCGC-CGAA--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.