miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 12501 0.67 0.748405
Target:  5'- gGCGcCAACaUGGCccCGCGGCccUGCCu -3'
miRNA:   3'- aCGU-GUUG-ACUGuuGCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 1010 0.73 0.384632
Target:  5'- gGCugAGgUGGCcuaugcuCGCGGCcUCGCCg -3'
miRNA:   3'- aCGugUUgACUGuu-----GCGCCGaAGCGG- -5'
11600 3' -53 NC_003085.1 + 24474 0.69 0.603694
Target:  5'- cGCAgGuggagGACAugGCGGCggUgGCCa -3'
miRNA:   3'- aCGUgUuga--CUGUugCGCCGa-AgCGG- -5'
11600 3' -53 NC_003085.1 + 22939 0.69 0.603694
Target:  5'- gGcCGCGuc-GACGGCGCGGCgaaGCCg -3'
miRNA:   3'- aC-GUGUugaCUGUUGCGCCGaagCGG- -5'
11600 3' -53 NC_003085.1 + 26716 0.76 0.285251
Target:  5'- cGCGCAggGCggUGACGGCGCGGCgccggUGCUg -3'
miRNA:   3'- aCGUGU--UG--ACUGUUGCGCCGaa---GCGG- -5'
11600 3' -53 NC_003085.1 + 12599 0.69 0.614974
Target:  5'- gGUcCGACUGACGcGCGUGGCgccccgggCGCUg -3'
miRNA:   3'- aCGuGUUGACUGU-UGCGCCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 42520 0.67 0.748405
Target:  5'- cGCACGccacCUG-CGugGCcucccGCUUCGCCu -3'
miRNA:   3'- aCGUGUu---GACuGUugCGc----CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 27163 0.69 0.614974
Target:  5'- gGgACcaGACgGGCGACGCuGGCUUCGgCg -3'
miRNA:   3'- aCgUG--UUGaCUGUUGCG-CCGAAGCgG- -5'
11600 3' -53 NC_003085.1 + 10718 0.69 0.614974
Target:  5'- gGCACuGGCUGACGGCaaGCGGa--CGCUg -3'
miRNA:   3'- aCGUG-UUGACUGUUG--CGCCgaaGCGG- -5'
11600 3' -53 NC_003085.1 + 28857 0.67 0.72684
Target:  5'- cGCGCcGCccGACuucCGCGGCgcUGCCg -3'
miRNA:   3'- aCGUGuUGa-CUGuu-GCGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 33896 0.67 0.737679
Target:  5'- gGCACGACcagUGuCGucgUGCGcGUUUCGCCg -3'
miRNA:   3'- aCGUGUUG---ACuGUu--GCGC-CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 29485 0.67 0.737679
Target:  5'- cGUACAguccuACUGACuaccuuGGCGCGGCcauggGCCa -3'
miRNA:   3'- aCGUGU-----UGACUG------UUGCGCCGaag--CGG- -5'
11600 3' -53 NC_003085.1 + 13628 0.67 0.748405
Target:  5'- gGCACGACUGAgu-CGCaGGCgcUCGgCg -3'
miRNA:   3'- aCGUGUUGACUguuGCG-CCGa-AGCgG- -5'
11600 3' -53 NC_003085.1 + 15211 0.67 0.748405
Target:  5'- cGCGCcGCggaagugGGCGAgGUGGaCUUgCGCCa -3'
miRNA:   3'- aCGUGuUGa------CUGUUgCGCC-GAA-GCGG- -5'
11600 3' -53 NC_003085.1 + 28507 0.67 0.757953
Target:  5'- cGCGCcauucaggcggugGACgcgucagGGCGAaucCGCGGCgucgUCGCCu -3'
miRNA:   3'- aCGUG-------------UUGa------CUGUU---GCGCCGa---AGCGG- -5'
11600 3' -53 NC_003085.1 + 32141 0.67 0.759007
Target:  5'- gGgGCGGCUGGUGGCGCGGUggguuacggCGUCg -3'
miRNA:   3'- aCgUGUUGACUGUUGCGCCGaa-------GCGG- -5'
11600 3' -53 NC_003085.1 + 48848 0.67 0.759007
Target:  5'- aGCACAACccGccguaggccGCGACG-GGCUugcagUCGCCg -3'
miRNA:   3'- aCGUGUUGa-C---------UGUUGCgCCGA-----AGCGG- -5'
11600 3' -53 NC_003085.1 + 5765 0.67 0.737679
Target:  5'- aGCGCAucccccUUGAgCGGCGCGuGCUcuaCGCCg -3'
miRNA:   3'- aCGUGUu-----GACU-GUUGCGC-CGAa--GCGG- -5'
11600 3' -53 NC_003085.1 + 10057 0.72 0.472801
Target:  5'- cGCGCGACUGACA---CGGCUgggUUGCUu -3'
miRNA:   3'- aCGUGUUGACUGUugcGCCGA---AGCGG- -5'
11600 3' -53 NC_003085.1 + 47722 0.72 0.462491
Target:  5'- cUGCGCcuGCUGACgGGCGCGGUgcgcguagcgUCGCa -3'
miRNA:   3'- -ACGUGu-UGACUG-UUGCGCCGa---------AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.