miRNA display CGI


Results 101 - 120 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 3' -53 NC_003085.1 + 13628 0.67 0.748405
Target:  5'- gGCACGACUGAgu-CGCaGGCgcUCGgCg -3'
miRNA:   3'- aCGUGUUGACUguuGCG-CCGa-AGCgG- -5'
11600 3' -53 NC_003085.1 + 29485 0.67 0.737679
Target:  5'- cGUACAguccuACUGACuaccuuGGCGCGGCcauggGCCa -3'
miRNA:   3'- aCGUGU-----UGACUG------UUGCGCCGaag--CGG- -5'
11600 3' -53 NC_003085.1 + 33896 0.67 0.737679
Target:  5'- gGCACGACcagUGuCGucgUGCGcGUUUCGCCg -3'
miRNA:   3'- aCGUGUUG---ACuGUu--GCGC-CGAAGCGG- -5'
11600 3' -53 NC_003085.1 + 5765 0.67 0.737679
Target:  5'- aGCGCAucccccUUGAgCGGCGCGuGCUcuaCGCCg -3'
miRNA:   3'- aCGUGUu-----GACU-GUUGCGC-CGAa--GCGG- -5'
11600 3' -53 NC_003085.1 + 42560 0.68 0.692663
Target:  5'- cGCGCGggcgaggGCUGAC-GCGaUGGCcucaaugUCGCCg -3'
miRNA:   3'- aCGUGU-------UGACUGuUGC-GCCGa------AGCGG- -5'
11600 3' -53 NC_003085.1 + 8116 0.68 0.687086
Target:  5'- aGUugGgcGCUGAUGACGUGGUggaccugcucaagCGCCg -3'
miRNA:   3'- aCGugU--UGACUGUUGCGCCGaa-----------GCGG- -5'
11600 3' -53 NC_003085.1 + 4205 0.69 0.648868
Target:  5'- gGaCGCcGCUGAC-GCGCGGCggguuaCGCUg -3'
miRNA:   3'- aC-GUGuUGACUGuUGCGCCGaa----GCGG- -5'
11600 3' -53 NC_003085.1 + 20999 0.69 0.648868
Target:  5'- aUGCGCGAgUu-CAACGCGcGCUUCGaCg -3'
miRNA:   3'- -ACGUGUUgAcuGUUGCGC-CGAAGCgG- -5'
11600 3' -53 NC_003085.1 + 23557 0.69 0.648868
Target:  5'- gGCGCuGCU--CGGCGCGGCguugcgaugUCGCUg -3'
miRNA:   3'- aCGUGuUGAcuGUUGCGCCGa--------AGCGG- -5'
11600 3' -53 NC_003085.1 + 27495 0.69 0.648868
Target:  5'- cUGUGgAACUgGACGuACGaCGGCggCGCCg -3'
miRNA:   3'- -ACGUgUUGA-CUGU-UGC-GCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 17675 0.68 0.660148
Target:  5'- gGCGCugaGACcGACGACGCGGCcagGCa -3'
miRNA:   3'- aCGUG---UUGaCUGUUGCGCCGaagCGg -5'
11600 3' -53 NC_003085.1 + 23648 0.68 0.660148
Target:  5'- aGCGCgAGCaGGCcGCGCaGGCgaaCGCCg -3'
miRNA:   3'- aCGUG-UUGaCUGuUGCG-CCGaa-GCGG- -5'
11600 3' -53 NC_003085.1 + 21684 0.68 0.6714
Target:  5'- aGCGCcuCcagGACGAgGUGGCccgcUUCGCCu -3'
miRNA:   3'- aCGUGuuGa--CUGUUgCGCCG----AAGCGG- -5'
11600 3' -53 NC_003085.1 + 41459 0.68 0.6714
Target:  5'- cGCGCAagGCUGG-GGCGCGGgUgaaguaccgCGCCa -3'
miRNA:   3'- aCGUGU--UGACUgUUGCGCCgAa--------GCGG- -5'
11600 3' -53 NC_003085.1 + 14870 0.66 0.819319
Target:  5'- cGCGCaAGgUGACgGACGagcaGGUgUUCGCCg -3'
miRNA:   3'- aCGUG-UUgACUG-UUGCg---CCG-AAGCGG- -5'
11600 3' -53 NC_003085.1 + 40688 0.66 0.819319
Target:  5'- gGCGCAGgggGACGACGUccgGGUgcuggacgCGCCg -3'
miRNA:   3'- aCGUGUUga-CUGUUGCG---CCGaa------GCGG- -5'
11600 3' -53 NC_003085.1 + 18772 0.66 0.809719
Target:  5'- cGgGCGAUgGACAAagcgaagGCGGCUgUCGCUg -3'
miRNA:   3'- aCgUGUUGaCUGUUg------CGCCGA-AGCGG- -5'
11600 3' -53 NC_003085.1 + 8515 0.66 0.799923
Target:  5'- cGCGCAccagcgggcGCaGGCGAagGCGGUgaCGCCa -3'
miRNA:   3'- aCGUGU---------UGaCUGUUg-CGCCGaaGCGG- -5'
11600 3' -53 NC_003085.1 + 1328 0.66 0.799923
Target:  5'- gGCACuGC-GAUGGCGCuggaguacggacGGCUUcCGCCu -3'
miRNA:   3'- aCGUGuUGaCUGUUGCG------------CCGAA-GCGG- -5'
11600 3' -53 NC_003085.1 + 36009 0.66 0.799923
Target:  5'- cGCgACAGCuUGGCggAugGCGGCcaugggcaCGCCg -3'
miRNA:   3'- aCG-UGUUG-ACUG--UugCGCCGaa------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.