miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11600 5' -57.6 NC_003085.1 + 34316 0.66 0.56293
Target:  5'- -gGGCAGuaguGCGucUCGUgcucgucgcaccacgCGGCGCGGCg- -3'
miRNA:   3'- caCCGUCu---UGC--AGCA---------------GUCGCGCCGac -5'
11600 5' -57.6 NC_003085.1 + 28517 0.66 0.558611
Target:  5'- -aGGCGGugGACG-CGUCAGggcgaaucCGCGGCg- -3'
miRNA:   3'- caCCGUC--UUGCaGCAGUC--------GCGCCGac -5'
11600 5' -57.6 NC_003085.1 + 20654 0.66 0.547856
Target:  5'- cGUGGCuc-GCGUCGcgUCGGaguugcuggaGCGGCUGc -3'
miRNA:   3'- -CACCGucuUGCAGC--AGUCg---------CGCCGAC- -5'
11600 5' -57.6 NC_003085.1 + 42728 0.66 0.547856
Target:  5'- -aGGCGuGGGCGUCGgggCgaugcgGGCGCGGUg- -3'
miRNA:   3'- caCCGU-CUUGCAGCa--G------UCGCGCCGac -5'
11600 5' -57.6 NC_003085.1 + 37407 0.66 0.547856
Target:  5'- -gGGCAGGuagugaccgAUG-CGcCAGUGCGGCUa -3'
miRNA:   3'- caCCGUCU---------UGCaGCaGUCGCGCCGAc -5'
11600 5' -57.6 NC_003085.1 + 20602 0.66 0.546785
Target:  5'- -cGGCAGcGCcgcggaaGUCGggCGGCGCGGgUGc -3'
miRNA:   3'- caCCGUCuUG-------CAGCa-GUCGCGCCgAC- -5'
11600 5' -57.6 NC_003085.1 + 18513 0.66 0.537169
Target:  5'- cUGGCAGGAC-UCGggucUGCGGCUGc -3'
miRNA:   3'- cACCGUCUUGcAGCagucGCGCCGAC- -5'
11600 5' -57.6 NC_003085.1 + 39876 0.66 0.526553
Target:  5'- aUGGCGGAgagACGcCGgugcUCGGCGgCGGCa- -3'
miRNA:   3'- cACCGUCU---UGCaGC----AGUCGC-GCCGac -5'
11600 5' -57.6 NC_003085.1 + 38826 0.67 0.480874
Target:  5'- uGUGaGCAGGgcgcacugccGCGUCGUCccacugcgacggcGCGCGGCg- -3'
miRNA:   3'- -CAC-CGUCU----------UGCAGCAGu------------CGCGCCGac -5'
11600 5' -57.6 NC_003085.1 + 40492 0.67 0.474792
Target:  5'- cUGGCGG-GCGUCGUCgAGCcggaGCcGCUGa -3'
miRNA:   3'- cACCGUCuUGCAGCAG-UCG----CGcCGAC- -5'
11600 5' -57.6 NC_003085.1 + 30012 0.68 0.424749
Target:  5'- -gGGCGGccuuggcGACGUCGUC--CGCGGCUu -3'
miRNA:   3'- caCCGUC-------UUGCAGCAGucGCGCCGAc -5'
11600 5' -57.6 NC_003085.1 + 26716 0.68 0.406925
Target:  5'- -cGcGCAGGGCGgUGaCGGCGCGGCg- -3'
miRNA:   3'- caC-CGUCUUGCaGCaGUCGCGCCGac -5'
11600 5' -57.6 NC_003085.1 + 13443 0.68 0.397734
Target:  5'- uUGGguGAcgugcucugguACGUCGcggucaucgCGGCGCGGCUc -3'
miRNA:   3'- cACCguCU-----------UGCAGCa--------GUCGCGCCGAc -5'
11600 5' -57.6 NC_003085.1 + 37553 0.68 0.396823
Target:  5'- gGUGGCAGAugGUuucaacgUGUcCAGCGCGuccCUGa -3'
miRNA:   3'- -CACCGUCUugCA-------GCA-GUCGCGCc--GAC- -5'
11600 5' -57.6 NC_003085.1 + 47867 0.69 0.388678
Target:  5'- -aGGUcGAGCGagaCGUCAGCGCGuGCg- -3'
miRNA:   3'- caCCGuCUUGCa--GCAGUCGCGC-CGac -5'
11600 5' -57.6 NC_003085.1 + 25180 0.69 0.385988
Target:  5'- gGUGGCGGuggcgaugagcgccAACGUCGccgagCAGUaCGGCUGg -3'
miRNA:   3'- -CACCGUC--------------UUGCAGCa----GUCGcGCCGAC- -5'
11600 5' -57.6 NC_003085.1 + 5999 0.69 0.370976
Target:  5'- aGUGGguGcguGACGUCaucgcucagCAGCGCGGCa- -3'
miRNA:   3'- -CACCguC---UUGCAGca-------GUCGCGCCGac -5'
11600 5' -57.6 NC_003085.1 + 11567 0.69 0.370976
Target:  5'- -gGGCA--GCGcCGUCGGCGUGGUg- -3'
miRNA:   3'- caCCGUcuUGCaGCAGUCGCGCCGac -5'
11600 5' -57.6 NC_003085.1 + 28181 0.69 0.353833
Target:  5'- -gGGcCAGGACGaaGUCugGGCGCGGCa- -3'
miRNA:   3'- caCC-GUCUUGCagCAG--UCGCGCCGac -5'
11600 5' -57.6 NC_003085.1 + 29379 0.7 0.340526
Target:  5'- -cGGCAGAACGccauggcggaguugcUgCGcCAGCGCGGCc- -3'
miRNA:   3'- caCCGUCUUGC---------------A-GCaGUCGCGCCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.