Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11600 | 5' | -57.6 | NC_003085.1 | + | 38726 | 1.07 | 0.000648 |
Target: 5'- gGUGGCAGAACGUCGUCAGCGCGGCUGu -3' miRNA: 3'- -CACCGUCUUGCAGCAGUCGCGCCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 26709 | 0.84 | 0.035918 |
Target: 5'- -cGGCGG-GCGUCGUCGGCGCGGgUGu -3' miRNA: 3'- caCCGUCuUGCAGCAGUCGCGCCgAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 550 | 0.77 | 0.117073 |
Target: 5'- uUGGC-GAACGgcgCGaggCGGCGCGGCUGg -3' miRNA: 3'- cACCGuCUUGCa--GCa--GUCGCGCCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 46117 | 0.77 | 0.110674 |
Target: 5'- -gGGCgucggGGAGCGUCGUCuGUGCGGCg- -3' miRNA: 3'- caCCG-----UCUUGCAGCAGuCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 37902 | 0.74 | 0.167739 |
Target: 5'- -gGGCAGGACGgugCGUUGGCGCaGGCc- -3' miRNA: 3'- caCCGUCUUGCa--GCAGUCGCG-CCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 45402 | 0.74 | 0.186411 |
Target: 5'- -aGGCGGAGCGcCGUCagcgaaagcauggGGCGCGGUg- -3' miRNA: 3'- caCCGUCUUGCaGCAG-------------UCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 25260 | 0.71 | 0.276686 |
Target: 5'- -cGGCGGGcguCGUCGUCGGCGCGc--- -3' miRNA: 3'- caCCGUCUu--GCAGCAGUCGCGCcgac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 48117 | 0.71 | 0.269756 |
Target: 5'- uUGGCGGcAACGUCGcCAGCaGUcugGGCUGc -3' miRNA: 3'- cACCGUC-UUGCAGCaGUCG-CG---CCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 46899 | 0.7 | 0.305824 |
Target: 5'- -gGGCuuguGAAgGUCGUCAcCGCGGCa- -3' miRNA: 3'- caCCGu---CUUgCAGCAGUcGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 22938 | 0.7 | 0.305824 |
Target: 5'- -aGGCc--GCGUCGaCGGCGCGGCg- -3' miRNA: 3'- caCCGucuUGCAGCaGUCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 29379 | 0.7 | 0.340526 |
Target: 5'- -cGGCAGAACGccauggcggaguugcUgCGcCAGCGCGGCc- -3' miRNA: 3'- caCCGUCUUGC---------------A-GCaGUCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 5999 | 0.69 | 0.370976 |
Target: 5'- aGUGGguGcguGACGUCaucgcucagCAGCGCGGCa- -3' miRNA: 3'- -CACCguC---UUGCAGca-------GUCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 25180 | 0.69 | 0.385988 |
Target: 5'- gGUGGCGGuggcgaugagcgccAACGUCGccgagCAGUaCGGCUGg -3' miRNA: 3'- -CACCGUC--------------UUGCAGCa----GUCGcGCCGAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 47867 | 0.69 | 0.388678 |
Target: 5'- -aGGUcGAGCGagaCGUCAGCGCGuGCg- -3' miRNA: 3'- caCCGuCUUGCa--GCAGUCGCGC-CGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 11567 | 0.69 | 0.370976 |
Target: 5'- -gGGCA--GCGcCGUCGGCGUGGUg- -3' miRNA: 3'- caCCGUcuUGCaGCAGUCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 28181 | 0.69 | 0.353833 |
Target: 5'- -gGGcCAGGACGaaGUCugGGCGCGGCa- -3' miRNA: 3'- caCC-GUCUUGCagCAG--UCGCGCCGac -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 13443 | 0.68 | 0.397734 |
Target: 5'- uUGGguGAcgugcucugguACGUCGcggucaucgCGGCGCGGCUc -3' miRNA: 3'- cACCguCU-----------UGCAGCa--------GUCGCGCCGAc -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 37553 | 0.68 | 0.396823 |
Target: 5'- gGUGGCAGAugGUuucaacgUGUcCAGCGCGuccCUGa -3' miRNA: 3'- -CACCGUCUugCA-------GCA-GUCGCGCc--GAC- -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 30012 | 0.68 | 0.424749 |
Target: 5'- -gGGCGGccuuggcGACGUCGUC--CGCGGCUu -3' miRNA: 3'- caCCGUC-------UUGCAGCAGucGCGCCGAc -5' |
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11600 | 5' | -57.6 | NC_003085.1 | + | 26716 | 0.68 | 0.406925 |
Target: 5'- -cGcGCAGGGCGgUGaCGGCGCGGCg- -3' miRNA: 3'- caC-CGUCUUGCaGCaGUCGCGCCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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