Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11601 | 3' | -58.3 | NC_003085.1 | + | 12346 | 0.71 | 0.254892 |
Target: 5'- cCGGCGUGaCGGUGcCAGCAcUCGUGa- -3' miRNA: 3'- uGCCGCGC-GCCGCuGUCGU-AGUACaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 8544 | 0.71 | 0.229681 |
Target: 5'- uCGGCGCGCGGCGAgcucgucaCGGCAggUCuUGa- -3' miRNA: 3'- uGCCGCGCGCCGCU--------GUCGU--AGuACaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 9511 | 0.72 | 0.212182 |
Target: 5'- gGCGGCGCGCGGCG--GGuCAUCGg--- -3' miRNA: 3'- -UGCCGCGCGCCGCugUC-GUAGUacaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 22899 | 0.67 | 0.405662 |
Target: 5'- cCGGUGCGuCGGCGuuCGGCGUCu---- -3' miRNA: 3'- uGCCGCGC-GCCGCu-GUCGUAGuacaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 39890 | 0.67 | 0.424482 |
Target: 5'- cCGGUGCuCGGCGGCGGCAggcCAa--- -3' miRNA: 3'- uGCCGCGcGCCGCUGUCGUa--GUacaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 33562 | 0.67 | 0.434086 |
Target: 5'- gACGGaccauGCGCGGCGACauguugccgaAGCGguggCAUGa- -3' miRNA: 3'- -UGCCg----CGCGCCGCUG----------UCGUa---GUACaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 47367 | 0.66 | 0.504589 |
Target: 5'- gAUGGCGCcgagguGCGGCGGCuGCGcUCGUc-- -3' miRNA: 3'- -UGCCGCG------CGCCGCUGuCGU-AGUAcaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 39136 | 0.66 | 0.504589 |
Target: 5'- -aGGCGaCGUGGCGGgGGCcgCAUc-- -3' miRNA: 3'- ugCCGC-GCGCCGCUgUCGuaGUAcaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 29232 | 0.66 | 0.498342 |
Target: 5'- -gGGCGaagGUGGCGACGuaccggaaggcguccGCGUCGUGg- -3' miRNA: 3'- ugCCGCg--CGCCGCUGU---------------CGUAGUACaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 40979 | 0.66 | 0.483903 |
Target: 5'- gGCGGgccaGCGCcucGGCGGCcuucuggcGCGUCAUGUa -3' miRNA: 3'- -UGCCg---CGCG---CCGCUGu-------CGUAGUACAa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 40890 | 0.66 | 0.476759 |
Target: 5'- gACGGCGgcaugccacgguuguUGCGGCGGgAGCggggcaaGUCAUGg- -3' miRNA: 3'- -UGCCGC---------------GCGCCGCUgUCG-------UAGUACaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 26129 | 0.66 | 0.4727 |
Target: 5'- gGCGGCGCuuggccggccagaGCGGCGucaAGCAUCu---- -3' miRNA: 3'- -UGCCGCG-------------CGCCGCug-UCGUAGuacaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 29016 | 0.66 | 0.463632 |
Target: 5'- aGCGGCuCGCGcGCGGCGGaCAUCu---- -3' miRNA: 3'- -UGCCGcGCGC-CGCUGUC-GUAGuacaa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 33280 | 0.66 | 0.46263 |
Target: 5'- cACGGCucaccucgaaccaGCGCGGCcaccACGGCGUCAcgGUc -3' miRNA: 3'- -UGCCG-------------CGCGCCGc---UGUCGUAGUa-CAa -5' |
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11601 | 3' | -58.3 | NC_003085.1 | + | 2789 | 0.72 | 0.206609 |
Target: 5'- gGCGGCGCuccagGCGGCGGCgaagcgccucGGCAUCAcUGg- -3' miRNA: 3'- -UGCCGCG-----CGCCGCUG----------UCGUAGU-ACaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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