miRNA display CGI


Results 61 - 70 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 39154 0.66 0.624086
Target:  5'- gGCAAaggGCUACGGCGUCGUCugGACg--- -3'
miRNA:   3'- -CGUUg--UGAUGCCGCGGCGG--CUGagag -5'
11601 5' -56.6 NC_003085.1 + 46076 0.66 0.624086
Target:  5'- cGCGucGCGCUuaccgACGGCgaGCCGCUGGgUCg- -3'
miRNA:   3'- -CGU--UGUGA-----UGCCG--CGGCGGCUgAGag -5'
11601 5' -56.6 NC_003085.1 + 28865 0.66 0.631779
Target:  5'- cCGACuuCcGCGGCGCUGCCGAgCagcagucgcaggcgUCUCa -3'
miRNA:   3'- cGUUGu-GaUGCCGCGGCGGCU-G--------------AGAG- -5'
11601 5' -56.6 NC_003085.1 + 48062 0.66 0.633977
Target:  5'- cGCGAUgauucggGCUcCGGUGUuuuCGUCGAUUCUCa -3'
miRNA:   3'- -CGUUG-------UGAuGCCGCG---GCGGCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 38566 0.66 0.635076
Target:  5'- aGCGACGCggaGGgGuuGCa-ACUCUCg -3'
miRNA:   3'- -CGUUGUGaugCCgCggCGgcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 44624 0.66 0.635076
Target:  5'- cGCcGCACUauuGCGGCGagGuuGGCUCa- -3'
miRNA:   3'- -CGuUGUGA---UGCCGCggCggCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 42244 0.66 0.635077
Target:  5'- gGCAGCGCU---GCGCCauccacauGCCGAagguaCUCUCg -3'
miRNA:   3'- -CGUUGUGAugcCGCGG--------CGGCU-----GAGAG- -5'
11601 5' -56.6 NC_003085.1 + 26122 0.66 0.635077
Target:  5'- gGCGGC-CgGCGGCGCUugGCCGGC-Ca- -3'
miRNA:   3'- -CGUUGuGaUGCCGCGG--CGGCUGaGag -5'
11601 5' -56.6 NC_003085.1 + 48527 0.66 0.635077
Target:  5'- -uGGCACc-CGGaCGCgGCCGACgCUCc -3'
miRNA:   3'- cgUUGUGauGCC-GCGgCGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 38052 0.66 0.635077
Target:  5'- aGCAGcCACcgcgGCGGUGCgucaGCCGGCgguagcgCUCc -3'
miRNA:   3'- -CGUU-GUGa---UGCCGCGg---CGGCUGa------GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.