Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11601 | 5' | -56.6 | NC_003085.1 | + | 38086 | 0.72 | 0.290969 |
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Target: 5'- gGCAGCGCaggugucCGGCGCCGCC-ACcaucgUCUCg -3' miRNA: 3'- -CGUUGUGau-----GCCGCGGCGGcUG-----AGAG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 557 | 0.72 | 0.290969 |
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Target: 5'- aCGGCGCgagGCGGCGCgGCUGGCgggccaaugCUCc -3' miRNA: 3'- cGUUGUGa--UGCCGCGgCGGCUGa--------GAG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 31449 | 0.72 | 0.283757 |
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Target: 5'- aGCgAGC-CUugGGCGCCaGuCCGcGCUCUCg -3' miRNA: 3'- -CG-UUGuGAugCCGCGG-C-GGC-UGAGAG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 10459 | 0.73 | 0.262968 |
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Target: 5'- cGCGGCGCUuuGGCGCCccucggcugGCCGAC-CUg -3' miRNA: 3'- -CGUUGUGAugCCGCGG---------CGGCUGaGAg -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 28802 | 0.73 | 0.262968 |
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Target: 5'- uGCGGCGCgAgGaGUGCCGCUGGCUCa- -3' miRNA: 3'- -CGUUGUGaUgC-CGCGGCGGCUGAGag -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 11770 | 0.73 | 0.243434 |
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Target: 5'- aCGACGgUACGGCGgCGCCGcGCUC-Cg -3' miRNA: 3'- cGUUGUgAUGCCGCgGCGGC-UGAGaG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 45223 | 0.74 | 0.219282 |
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Target: 5'- cGCGaaGCGCUGCGGC-CCGgCUGACgCUCa -3' miRNA: 3'- -CGU--UGUGAUGCCGcGGC-GGCUGaGAG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 7645 | 0.75 | 0.181946 |
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Target: 5'- -gGGCGCUugGGCGgCGCCGACa--- -3' miRNA: 3'- cgUUGUGAugCCGCgGCGGCUGagag -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 39276 | 0.78 | 0.120401 |
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Target: 5'- cGCGcCuccuCUACGGCGCUGCgGugUCUCg -3' miRNA: 3'- -CGUuGu---GAUGCCGCGGCGgCugAGAG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 38895 | 1.12 | 0.000414 |
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Target: 5'- uGCAACACUACGGCGCCGCCGACUCUCg -3' miRNA: 3'- -CGUUGUGAUGCCGCGGCGGCUGAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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