miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11601 5' -56.6 NC_003085.1 + 35183 0.7 0.397735
Target:  5'- cGCGGCGCUugACGGCagcaGCCugGCCGcACgUCUCg -3'
miRNA:   3'- -CGUUGUGA--UGCCG----CGG--CGGC-UG-AGAG- -5'
11601 5' -56.6 NC_003085.1 + 36966 0.67 0.558611
Target:  5'- cGCGGgGCcauguUGGCGCCGCuuCGACUCc- -3'
miRNA:   3'- -CGUUgUGau---GCCGCGGCG--GCUGAGag -5'
11601 5' -56.6 NC_003085.1 + 36997 0.72 0.305824
Target:  5'- aGCAggGCACUGCuGGCGCCccagcGCUGACcUUCa -3'
miRNA:   3'- -CGU--UGUGAUG-CCGCGG-----CGGCUGaGAG- -5'
11601 5' -56.6 NC_003085.1 + 37050 0.69 0.4257
Target:  5'- cGgAGCGCaGCGGCcCCGCCGGgUCg- -3'
miRNA:   3'- -CgUUGUGaUGCCGcGGCGGCUgAGag -5'
11601 5' -56.6 NC_003085.1 + 37214 0.67 0.569424
Target:  5'- aGCGGC-CUucaauucugGCGGCccaGCCGCCGcGCUCa- -3'
miRNA:   3'- -CGUUGuGA---------UGCCG---CGGCGGC-UGAGag -5'
11601 5' -56.6 NC_003085.1 + 37681 0.71 0.329183
Target:  5'- cCGACACgcccggagcGCGGCGCCGCCGuACcgUCg -3'
miRNA:   3'- cGUUGUGa--------UGCCGCGGCGGC-UGagAG- -5'
11601 5' -56.6 NC_003085.1 + 37851 0.66 0.613102
Target:  5'- gGUAGCGCUGCcuGCGCUGgCCGGC-Ca- -3'
miRNA:   3'- -CGUUGUGAUGc-CGCGGC-GGCUGaGag -5'
11601 5' -56.6 NC_003085.1 + 37897 0.67 0.537168
Target:  5'- gGCAcCACgccgACGGCGCUGCCc-UUCUUc -3'
miRNA:   3'- -CGUuGUGa---UGCCGCGGCGGcuGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 38052 0.66 0.635077
Target:  5'- aGCAGcCACcgcgGCGGUGCgucaGCCGGCgguagcgCUCc -3'
miRNA:   3'- -CGUU-GUGa---UGCCGCGg---CGGCUGa------GAG- -5'
11601 5' -56.6 NC_003085.1 + 38086 0.72 0.290969
Target:  5'- gGCAGCGCaggugucCGGCGCCGCC-ACcaucgUCUCg -3'
miRNA:   3'- -CGUUGUGau-----GCCGCGGCGGcUG-----AGAG- -5'
11601 5' -56.6 NC_003085.1 + 38566 0.66 0.635076
Target:  5'- aGCGACGCggaGGgGuuGCa-ACUCUCg -3'
miRNA:   3'- -CGUUGUGaugCCgCggCGgcUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 38895 1.12 0.000414
Target:  5'- uGCAACACUACGGCGCCGCCGACUCUCg -3'
miRNA:   3'- -CGUUGUGAUGCCGCGGCGGCUGAGAG- -5'
11601 5' -56.6 NC_003085.1 + 39154 0.66 0.624086
Target:  5'- gGCAAaggGCUACGGCGUCGUCugGACg--- -3'
miRNA:   3'- -CGUUg--UGAUGCCGCGGCGG--CUGagag -5'
11601 5' -56.6 NC_003085.1 + 39276 0.78 0.120401
Target:  5'- cGCGcCuccuCUACGGCGCUGCgGugUCUCg -3'
miRNA:   3'- -CGUuGu---GAUGCCGCGGCGgCugAGAG- -5'
11601 5' -56.6 NC_003085.1 + 39567 0.7 0.370976
Target:  5'- cGCAGCugcguACUACGGCGCCaCUGGCaagCUg -3'
miRNA:   3'- -CGUUG-----UGAUGCCGCGGcGGCUGa--GAg -5'
11601 5' -56.6 NC_003085.1 + 40377 0.69 0.453816
Target:  5'- cGCGGCGCUGacgccucUGGCGCUGgCCGGCaUC-Ca -3'
miRNA:   3'- -CGUUGUGAU-------GCCGCGGC-GGCUG-AGaG- -5'
11601 5' -56.6 NC_003085.1 + 40668 0.69 0.406925
Target:  5'- cGCAAC-CUcGCGGaGCCGCCGGCg--- -3'
miRNA:   3'- -CGUUGuGA-UGCCgCGGCGGCUGagag -5'
11601 5' -56.6 NC_003085.1 + 41537 0.69 0.454804
Target:  5'- cGCAACGaguUGGUGCaCGCCGACaggacgcgCUCg -3'
miRNA:   3'- -CGUUGUgauGCCGCG-GCGGCUGa-------GAG- -5'
11601 5' -56.6 NC_003085.1 + 41817 0.7 0.362334
Target:  5'- cCAGgACU-CGGCGCCGuuGAUgcgCUCc -3'
miRNA:   3'- cGUUgUGAuGCCGCGGCggCUGa--GAG- -5'
11601 5' -56.6 NC_003085.1 + 42083 0.69 0.406925
Target:  5'- --cACGCg--GGCGCCGUCGGC-CUCg -3'
miRNA:   3'- cguUGUGaugCCGCGGCGGCUGaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.