Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11601 | 5' | -56.6 | NC_003085.1 | + | 26744 | 0.66 | 0.591195 |
Target: 5'- ----uGCUucuCGGCaGCCGCCgccaggGACUCUCu -3' miRNA: 3'- cguugUGAu--GCCG-CGGCGG------CUGAGAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 26718 | 0.71 | 0.353833 |
Target: 5'- cGCAGgGCggugACGGCGCggCGCCGguGCUgUCa -3' miRNA: 3'- -CGUUgUGa---UGCCGCG--GCGGC--UGAgAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 26603 | 0.71 | 0.353833 |
Target: 5'- cCAcCugUG-GGCGCUGCCGgACUCUCc -3' miRNA: 3'- cGUuGugAUgCCGCGGCGGC-UGAGAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 26461 | 0.68 | 0.516018 |
Target: 5'- cCAGgACUGCGGCGCgCGCac-CUCUg -3' miRNA: 3'- cGUUgUGAUGCCGCG-GCGgcuGAGAg -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 26122 | 0.66 | 0.635077 |
Target: 5'- gGCGGC-CgGCGGCGCUugGCCGGC-Ca- -3' miRNA: 3'- -CGUUGuGaUGCCGCGG--CGGCUGaGag -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 25438 | 0.71 | 0.35299 |
Target: 5'- aGCAGCACUGagcggcggcCGGUuucuggguggucgGCCGCCG-CUCUUc -3' miRNA: 3'- -CGUUGUGAU---------GCCG-------------CGGCGGCuGAGAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 24225 | 0.67 | 0.552151 |
Target: 5'- cGCGgagcGCACcaggGCGGCGCCggugaugagguaccaGCCGuACUgCUCg -3' miRNA: 3'- -CGU----UGUGa---UGCCGCGG---------------CGGC-UGA-GAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 21106 | 0.67 | 0.526553 |
Target: 5'- cGCGcCACgGCGGUGCCGCgGAUgg-Cg -3' miRNA: 3'- -CGUuGUGaUGCCGCGGCGgCUGagaG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 21021 | 0.67 | 0.569424 |
Target: 5'- uCGACGCggACGGCaGCCGCaauCUCUg -3' miRNA: 3'- cGUUGUGa-UGCCG-CGGCGgcuGAGAg -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 20857 | 0.69 | 0.444981 |
Target: 5'- aGCucgcCGCUGCGGUGCCGCCcACcCa- -3' miRNA: 3'- -CGuu--GUGAUGCCGCGGCGGcUGaGag -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 18659 | 0.67 | 0.537169 |
Target: 5'- cGCggUgauuGCUGCGGCG-CGCucaCGGCUCUUc -3' miRNA: 3'- -CGuuG----UGAUGCCGCgGCG---GCUGAGAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 17232 | 0.7 | 0.379758 |
Target: 5'- -gAGCAC-GCGGCGCC-CCGuGCUCUg -3' miRNA: 3'- cgUUGUGaUGCCGCGGcGGC-UGAGAg -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 14900 | 0.7 | 0.370106 |
Target: 5'- -uGGCugUGCGGCGCacgcggGCCGGCUgguggcgCUCg -3' miRNA: 3'- cgUUGugAUGCCGCGg-----CGGCUGA-------GAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 13466 | 0.66 | 0.591194 |
Target: 5'- cGCGGuCAUcGCGGCGCgGCuCGAC-CUg -3' miRNA: 3'- -CGUU-GUGaUGCCGCGgCG-GCUGaGAg -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 13003 | 0.67 | 0.547857 |
Target: 5'- aGUGGCACUACcucgccaugaGGCGCCGCC--CUC-Cg -3' miRNA: 3'- -CGUUGUGAUG----------CCGCGGCGGcuGAGaG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 11770 | 0.73 | 0.243434 |
Target: 5'- aCGACGgUACGGCGgCGCCGcGCUC-Cg -3' miRNA: 3'- cGUUGUgAUGCCGCgGCGGC-UGAGaG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 10464 | 0.66 | 0.587919 |
Target: 5'- cGCGACGuagcgggcucgaauCUGCGGgGCCGucucaCCGACgauggCUCc -3' miRNA: 3'- -CGUUGU--------------GAUGCCgCGGC-----GGCUGa----GAG- -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 10459 | 0.73 | 0.262968 |
Target: 5'- cGCGGCGCUuuGGCGCCccucggcugGCCGAC-CUg -3' miRNA: 3'- -CGUUGUGAugCCGCGG---------CGGCUGaGAg -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 9983 | 0.68 | 0.516017 |
Target: 5'- aGCuucCGCUgACGGCcuaCGCCGACUCa- -3' miRNA: 3'- -CGuu-GUGA-UGCCGcg-GCGGCUGAGag -5' |
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11601 | 5' | -56.6 | NC_003085.1 | + | 9144 | 0.68 | 0.464742 |
Target: 5'- aGCGGCACcugGCGGagcuCGCCGCCGcGCagUCc -3' miRNA: 3'- -CGUUGUGa--UGCC----GCGGCGGC-UGagAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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