Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11601 | 5' | -56.6 | NC_003085.1 | + | 37851 | 0.66 | 0.613102 |
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Target: 5'- gGUAGCGCUGCcuGCGCUGgCCGGC-Ca- -3' miRNA: 3'- -CGUUGUGAUGc-CGCGGC-GGCUGaGag -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 21021 | 0.67 | 0.569424 |
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Target: 5'- uCGACGCggACGGCaGCCGCaauCUCUg -3' miRNA: 3'- cGUUGUGa-UGCCG-CGGCGgcuGAGAg -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 37214 | 0.67 | 0.569424 |
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Target: 5'- aGCGGC-CUucaauucugGCGGCccaGCCGCCGcGCUCa- -3' miRNA: 3'- -CGUUGuGA---------UGCCG---CGGCGGC-UGAGag -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 36966 | 0.67 | 0.558611 |
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Target: 5'- cGCGGgGCcauguUGGCGCCGCuuCGACUCc- -3' miRNA: 3'- -CGUUgUGau---GCCGCGGCG--GCUGAGag -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 47873 | 0.67 | 0.537168 |
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Target: 5'- aGCGAgACgucaGCGcGUGCgGCCuGCUCUCu -3' miRNA: 3'- -CGUUgUGa---UGC-CGCGgCGGcUGAGAG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 37897 | 0.67 | 0.537168 |
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Target: 5'- gGCAcCACgccgACGGCGCUGCCc-UUCUUc -3' miRNA: 3'- -CGUuGUGa---UGCCGCGGCGGcuGAGAG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 48396 | 0.68 | 0.517067 |
|
Target: 5'- aGCAGCGCcgcauugucugccuCGGCGgCGCUGGCUucCUCc -3' miRNA: 3'- -CGUUGUGau------------GCCGCgGCGGCUGA--GAG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 2369 | 0.68 | 0.516017 |
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Target: 5'- uGCGAgGCcGCGGCG-CGCgaGCUCUCg -3' miRNA: 3'- -CGUUgUGaUGCCGCgGCGgcUGAGAG- -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 9983 | 0.68 | 0.516017 |
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Target: 5'- aGCuucCGCUgACGGCcuaCGCCGACUCa- -3' miRNA: 3'- -CGuu-GUGA-UGCCGcg-GCGGCUGAGag -5' |
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| 11601 | 5' | -56.6 | NC_003085.1 | + | 38895 | 1.12 | 0.000414 |
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Target: 5'- uGCAACACUACGGCGCCGCCGACUCUCg -3' miRNA: 3'- -CGUUGUGAUGCCGCGGCGGCUGAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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