Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11602 | 3' | -60.3 | NC_003085.1 | + | 26004 | 0.69 | 0.251437 |
Target: 5'- -cGCuGCGCUGggccuccgucaUGCGUcCCUGCUGCg -3' miRNA: 3'- ccCGuCGCGAC-----------GCGCAuGGACGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 26045 | 0.68 | 0.285163 |
Target: 5'- uGGGCgaAGCGCUGCaUG-ACUcGCUGCUc -3' miRNA: 3'- -CCCG--UCGCGACGcGCaUGGaCGACGA- -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 26220 | 0.71 | 0.188807 |
Target: 5'- cGGGCGGCGCggugcgaaGCGCGgcgGCCgucUGgaGCa -3' miRNA: 3'- -CCCGUCGCGa-------CGCGCa--UGG---ACgaCGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 26721 | 0.7 | 0.215382 |
Target: 5'- aGGGCGGUGacgGCGCGgcGCCggUGCUGUc -3' miRNA: 3'- -CCCGUCGCga-CGCGCa-UGG--ACGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 27358 | 0.66 | 0.363063 |
Target: 5'- cGGGCucUGCUGgGCG-GCCUGCuucUGCg -3' miRNA: 3'- -CCCGucGCGACgCGCaUGGACG---ACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 27483 | 0.71 | 0.19388 |
Target: 5'- aGGG-AGCGCUGC-CGggcACCUGCUGa- -3' miRNA: 3'- -CCCgUCGCGACGcGCa--UGGACGACga -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 28107 | 0.74 | 0.103487 |
Target: 5'- uGGGCAGCGC-GCGCcagaagcagGUGCaguUGCUGCg -3' miRNA: 3'- -CCCGUCGCGaCGCG---------CAUGg--ACGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 28718 | 0.66 | 0.389141 |
Target: 5'- cGGGCAGCagccgguccuGgaGgGCGUacuccagcGCCUGCUGg- -3' miRNA: 3'- -CCCGUCG----------CgaCgCGCA--------UGGACGACga -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 29187 | 0.68 | 0.295225 |
Target: 5'- uGGCAGCGCcGCGaggacgcggagcgcaCGcGCCUGCUGa- -3' miRNA: 3'- cCCGUCGCGaCGC---------------GCaUGGACGACga -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 30338 | 0.68 | 0.30706 |
Target: 5'- uGGCGGaCGCUGuCGCGgggcGCaCUGCgGCg -3' miRNA: 3'- cCCGUC-GCGAC-GCGCa---UG-GACGaCGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 34269 | 0.66 | 0.371619 |
Target: 5'- cGGcGCGGCGCUG-GCGcACCgGCUcaGCc -3' miRNA: 3'- -CC-CGUCGCGACgCGCaUGGaCGA--CGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 35939 | 0.67 | 0.330221 |
Target: 5'- gGGGUAGCGCuUGCGgagcuucucgaCGUucGCC-GCUGCc -3' miRNA: 3'- -CCCGUCGCG-ACGC-----------GCA--UGGaCGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 36371 | 0.68 | 0.292322 |
Target: 5'- --uCAGCGCgGCGUGccaguuCCUGCUGCa -3' miRNA: 3'- cccGUCGCGaCGCGCau----GGACGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 36452 | 0.68 | 0.271261 |
Target: 5'- aGGGCGGCGCcucaugGCGagguaGUGCCacugGCgGCUu -3' miRNA: 3'- -CCCGUCGCGa-----CGCg----CAUGGa---CGaCGA- -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 37850 | 0.66 | 0.3972 |
Target: 5'- uGGUAGCGCUGCcuGCGcugGCCgGCcagacgucggaggUGCUg -3' miRNA: 3'- cCCGUCGCGACG--CGCa--UGGaCG-------------ACGA- -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 39042 | 1.03 | 0.000678 |
Target: 5'- uGGGCgAGCGCUGCGCGUACCUGCUGCUg -3' miRNA: 3'- -CCCG-UCGCGACGCGCAUGGACGACGA- -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 39257 | 0.68 | 0.27058 |
Target: 5'- uGGGCcgcagcauGUGCUGCGCGccuCCUcuacggcGCUGCg -3' miRNA: 3'- -CCCGu-------CGCGACGCGCau-GGA-------CGACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 40326 | 0.67 | 0.346363 |
Target: 5'- cGGCaAGgGCUgGCGCGUGCCUcaGUggGCg -3' miRNA: 3'- cCCG-UCgCGA-CGCGCAUGGA--CGa-CGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 42242 | 0.72 | 0.156467 |
Target: 5'- gGGGCAGCGCUGCGCcauCCacaUGCc -3' miRNA: 3'- -CCCGUCGCGACGCGcauGGacgACGa -5' |
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11602 | 3' | -60.3 | NC_003085.1 | + | 42608 | 0.68 | 0.292322 |
Target: 5'- cGGGUAGUGCUGCGCG-GCUUuC-GCg -3' miRNA: 3'- -CCCGUCGCGACGCGCaUGGAcGaCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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