Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11602 | 5' | -54.5 | NC_003085.1 | + | 43121 | 0.76 | 0.183527 |
Target: 5'- gGAACAGCCUUgGCGUAGaGC-GCGCc -3' miRNA: 3'- aCUUGUCGGAGgCGUAUC-CGuUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 30507 | 0.68 | 0.577247 |
Target: 5'- -cGACAGCCagaUGCAggaacaggAGGCGGCGCg -3' miRNA: 3'- acUUGUCGGag-GCGUa-------UCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 46200 | 0.67 | 0.5986 |
Target: 5'- -cAACGGCCUCCggucguguuguggGCAUAGGCGAaggGUUc -3' miRNA: 3'- acUUGUCGGAGG-------------CGUAUCCGUUg--CGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 30001 | 0.66 | 0.712189 |
Target: 5'- gGAGCGGCCcugggCgGCcuuGGCGACGUc -3' miRNA: 3'- aCUUGUCGGa----GgCGuauCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 22797 | 0.66 | 0.701121 |
Target: 5'- -cAACGGCCgcucCCGCccaggAGGCGACGg- -3' miRNA: 3'- acUUGUCGGa---GGCGua---UCCGUUGCga -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 26972 | 0.66 | 0.689982 |
Target: 5'- cGAGCucGGCCUgCGCAgccggcUGGGCuacCGCg -3' miRNA: 3'- aCUUG--UCGGAgGCGU------AUCCGuu-GCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 21355 | 0.66 | 0.701121 |
Target: 5'- gGAGCGcGCCaUCCGCGUgguGGGCGucuACGaCa -3' miRNA: 3'- aCUUGU-CGG-AGGCGUA---UCCGU---UGC-Ga -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 23652 | 0.66 | 0.678784 |
Target: 5'- cGAGCAGg--CCGCGcAGGCgAACGCc -3' miRNA: 3'- aCUUGUCggaGGCGUaUCCG-UUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 18330 | 0.66 | 0.678784 |
Target: 5'- aGGGCAGCCgcaacgcgCUGCcuuacgGGGCggUGCa -3' miRNA: 3'- aCUUGUCGGa-------GGCGua----UCCGuuGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 13710 | 0.66 | 0.65626 |
Target: 5'- cGAAgAGCCuguuccuguUCCGUcgAGGUcACGCg -3' miRNA: 3'- aCUUgUCGG---------AGGCGuaUCCGuUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 42711 | 0.67 | 0.630245 |
Target: 5'- uUGAGCGGCggcacCUCagGCGUGGGCGucggggcgaugcggGCGCg -3' miRNA: 3'- -ACUUGUCG-----GAGg-CGUAUCCGU--------------UGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 23764 | 0.67 | 0.611016 |
Target: 5'- gUGAgagGCAGCCUCgaagcgGCAUGGGCGAauuCGUc -3' miRNA: 3'- -ACU---UGUCGGAGg-----CGUAUCCGUU---GCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 13259 | 0.67 | 0.611016 |
Target: 5'- cGAGCAGUa-CCaGC--AGGCAGCGCUc -3' miRNA: 3'- aCUUGUCGgaGG-CGuaUCCGUUGCGA- -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 3202 | 0.67 | 0.599727 |
Target: 5'- cGGGCccuGGCCcgaugCCGCA-AGGCGAUGCc -3' miRNA: 3'- aCUUG---UCGGa----GGCGUaUCCGUUGCGa -5' |
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11602 | 5' | -54.5 | NC_003085.1 | + | 39080 | 1.07 | 0.001118 |
Target: 5'- gUGAACAGCCUCCGCAUAGGCAACGCUc -3' miRNA: 3'- -ACUUGUCGGAGGCGUAUCCGUUGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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