Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11603 | 3' | -57.9 | NC_003085.1 | + | 28205 | 0.66 | 0.525546 |
Target: 5'- gACUUCGCGgAGU-UGGCGCCAgugucgGCCa -3' miRNA: 3'- gUGGAGUGUgUCAgGCCGCGGU------UGGa -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 22112 | 0.68 | 0.415717 |
Target: 5'- cCGCCcaGCAgAGcCCGGCGCCGcagcaGCCg -3' miRNA: 3'- -GUGGagUGUgUCaGGCCGCGGU-----UGGa -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 39904 | 0.68 | 0.425128 |
Target: 5'- aCACCcCAUGCAGaagCCaGCGUCGGCCg -3' miRNA: 3'- -GUGGaGUGUGUCa--GGcCGCGGUUGGa -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 30111 | 0.68 | 0.434666 |
Target: 5'- cCGCCUCcucuACACGGacgccaUCCGcCGCCGGCCc -3' miRNA: 3'- -GUGGAG----UGUGUC------AGGCcGCGGUUGGa -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 30236 | 0.67 | 0.454105 |
Target: 5'- -cCCUgGCGCAGgccuugCgCGGCGCcCAGCCc -3' miRNA: 3'- guGGAgUGUGUCa-----G-GCCGCG-GUUGGa -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 40835 | 0.67 | 0.474007 |
Target: 5'- gUACCUgACgGCGGcCgGGCugGCCAACCUg -3' miRNA: 3'- -GUGGAgUG-UGUCaGgCCG--CGGUUGGA- -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 2404 | 0.66 | 0.50465 |
Target: 5'- -cCCUUugG-GGUUCGGCGCCuGACCUc -3' miRNA: 3'- guGGAGugUgUCAGGCCGCGG-UUGGA- -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 25143 | 0.66 | 0.525546 |
Target: 5'- gCACCacgaaGCGCGGUguggCCGGCGaCCGugGCCUg -3' miRNA: 3'- -GUGGag---UGUGUCA----GGCCGC-GGU--UGGA- -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 6622 | 0.66 | 0.525546 |
Target: 5'- -uCCUCA---AGUCCGGCGCCGGa-- -3' miRNA: 3'- guGGAGUgugUCAGGCCGCGGUUgga -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 41810 | 0.68 | 0.415717 |
Target: 5'- aGgCUCGCGCAugUCGGCGCCGcCCa -3' miRNA: 3'- gUgGAGUGUGUcaGGCCGCGGUuGGa -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 25225 | 0.68 | 0.415717 |
Target: 5'- gUACCUCAU-CA--CCGGCGCCGcCCUg -3' miRNA: 3'- -GUGGAGUGuGUcaGGCCGCGGUuGGA- -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 18293 | 0.68 | 0.397282 |
Target: 5'- cCACCgggcggUGCACGccCCGGCGCUGGCCg -3' miRNA: 3'- -GUGGa-----GUGUGUcaGGCCGCGGUUGGa -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 42818 | 0.71 | 0.283754 |
Target: 5'- -gUCUUGCACgGGUCCGGCGCUGGCg- -3' miRNA: 3'- guGGAGUGUG-UCAGGCCGCGGUUGga -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 36845 | 0.71 | 0.283754 |
Target: 5'- gCACCUaCACGCuGcCUGGCGgCAACCc -3' miRNA: 3'- -GUGGA-GUGUGuCaGGCCGCgGUUGGa -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 26574 | 0.7 | 0.305741 |
Target: 5'- aCGCCgaCGCACcggAGUCCGGCGgCGACa- -3' miRNA: 3'- -GUGGa-GUGUG---UCAGGCCGCgGUUGga -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 38086 | 0.69 | 0.362029 |
Target: 5'- gGCa--GCGCAgguGUCCGGCGCCGccACCa -3' miRNA: 3'- gUGgagUGUGU---CAGGCCGCGGU--UGGa -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 36674 | 0.69 | 0.370636 |
Target: 5'- -gUCUCACAUAGgCgGGCGCCGgauuccggGCCUg -3' miRNA: 3'- guGGAGUGUGUCaGgCCGCGGU--------UGGA- -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 40317 | 0.69 | 0.379381 |
Target: 5'- cUACCUCGC-CGGcaagggCUGGCGCguGCCUc -3' miRNA: 3'- -GUGGAGUGuGUCa-----GGCCGCGguUGGA- -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 43503 | 0.69 | 0.379381 |
Target: 5'- cCGCCUCcaGCAGcCCGGCGUgGACg- -3' miRNA: 3'- -GUGGAGugUGUCaGGCCGCGgUUGga -5' |
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11603 | 3' | -57.9 | NC_003085.1 | + | 24367 | 0.68 | 0.388264 |
Target: 5'- gGCCUUugGCGG-CCGG-GCCAucaaugGCCUg -3' miRNA: 3'- gUGGAGugUGUCaGGCCgCGGU------UGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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