miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11603 3' -57.9 NC_003085.1 + 18293 0.68 0.397282
Target:  5'- cCACCgggcggUGCACGccCCGGCGCUGGCCg -3'
miRNA:   3'- -GUGGa-----GUGUGUcaGGCCGCGGUUGGa -5'
11603 3' -57.9 NC_003085.1 + 12394 0.68 0.397282
Target:  5'- cCACCUgcaucCGCACGucgUCGGCGCCAGCg- -3'
miRNA:   3'- -GUGGA-----GUGUGUca-GGCCGCGGUUGga -5'
11603 3' -57.9 NC_003085.1 + 24367 0.68 0.388264
Target:  5'- gGCCUUugGCGG-CCGG-GCCAucaaugGCCUg -3'
miRNA:   3'- gUGGAGugUGUCaGGCCgCGGU------UGGA- -5'
11603 3' -57.9 NC_003085.1 + 39743 0.68 0.388264
Target:  5'- aCGCCgaggaCACACAGgcguUCCGGCGCU--CCa -3'
miRNA:   3'- -GUGGa----GUGUGUC----AGGCCGCGGuuGGa -5'
11603 3' -57.9 NC_003085.1 + 40317 0.69 0.379381
Target:  5'- cUACCUCGC-CGGcaagggCUGGCGCguGCCUc -3'
miRNA:   3'- -GUGGAGUGuGUCa-----GGCCGCGguUGGA- -5'
11603 3' -57.9 NC_003085.1 + 43503 0.69 0.379381
Target:  5'- cCGCCUCcaGCAGcCCGGCGUgGACg- -3'
miRNA:   3'- -GUGGAGugUGUCaGGCCGCGgUUGga -5'
11603 3' -57.9 NC_003085.1 + 36674 0.69 0.370636
Target:  5'- -gUCUCACAUAGgCgGGCGCCGgauuccggGCCUg -3'
miRNA:   3'- guGGAGUGUGUCaGgCCGCGGU--------UGGA- -5'
11603 3' -57.9 NC_003085.1 + 38086 0.69 0.362029
Target:  5'- gGCa--GCGCAgguGUCCGGCGCCGccACCa -3'
miRNA:   3'- gUGgagUGUGU---CAGGCCGCGGU--UGGa -5'
11603 3' -57.9 NC_003085.1 + 34519 0.69 0.353563
Target:  5'- gCGCUUCGCGCAGuUCCGcgaguuggaGCGCCAcgcgcuggcgGCCg -3'
miRNA:   3'- -GUGGAGUGUGUC-AGGC---------CGCGGU----------UGGa -5'
11603 3' -57.9 NC_003085.1 + 48415 0.7 0.313355
Target:  5'- aGCCacgCGgGCAGUUCGGCGCCuuCUg -3'
miRNA:   3'- gUGGa--GUgUGUCAGGCCGCGGuuGGa -5'
11603 3' -57.9 NC_003085.1 + 26574 0.7 0.305741
Target:  5'- aCGCCgaCGCACcggAGUCCGGCGgCGACa- -3'
miRNA:   3'- -GUGGa-GUGUG---UCAGGCCGCgGUUGga -5'
11603 3' -57.9 NC_003085.1 + 42818 0.71 0.283754
Target:  5'- -gUCUUGCACgGGUCCGGCGCUGGCg- -3'
miRNA:   3'- guGGAGUGUG-UCAGGCCGCGGUUGga -5'
11603 3' -57.9 NC_003085.1 + 36845 0.71 0.283754
Target:  5'- gCACCUaCACGCuGcCUGGCGgCAACCc -3'
miRNA:   3'- -GUGGA-GUGUGuCaGGCCGCgGUUGGa -5'
11603 3' -57.9 NC_003085.1 + 23523 0.71 0.263036
Target:  5'- aCGCUUCACGCAGUCCuuCGCCuucuCCa -3'
miRNA:   3'- -GUGGAGUGUGUCAGGccGCGGuu--GGa -5'
11603 3' -57.9 NC_003085.1 + 16606 0.71 0.256408
Target:  5'- gGCCUCccGgGCGGUCCcgcGGCGCgCGGCCUc -3'
miRNA:   3'- gUGGAG--UgUGUCAGG---CCGCG-GUUGGA- -5'
11603 3' -57.9 NC_003085.1 + 35664 0.74 0.163556
Target:  5'- cCACCUcCACGCAGaCUGGCGUCAcgcucGCCUu -3'
miRNA:   3'- -GUGGA-GUGUGUCaGGCCGCGGU-----UGGA- -5'
11603 3' -57.9 NC_003085.1 + 8726 0.75 0.154876
Target:  5'- aCACCUC-CAguGccUCCGGCGCCGGCg- -3'
miRNA:   3'- -GUGGAGuGUguC--AGGCCGCGGUUGga -5'
11603 3' -57.9 NC_003085.1 + 48829 0.75 0.138758
Target:  5'- gCGCCUCgACGaGGUCC-GCGCCAGCCUc -3'
miRNA:   3'- -GUGGAG-UGUgUCAGGcCGCGGUUGGA- -5'
11603 3' -57.9 NC_003085.1 + 42830 0.79 0.079056
Target:  5'- gCACCUUGCGCucacGUCCGGCGCCGgACUUg -3'
miRNA:   3'- -GUGGAGUGUGu---CAGGCCGCGGU-UGGA- -5'
11603 3' -57.9 NC_003085.1 + 39377 1.07 0.000682
Target:  5'- cCACCUCACACAGUCCGGCGCCAACCUc -3'
miRNA:   3'- -GUGGAGUGUGUCAGGCCGCGGUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.