Results 61 - 62 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11604 | 3' | -56.7 | NC_003085.1 | + | 592 | 0.67 | 0.551704 |
Target: 5'- nCGCAGGGUGucuc--GACUGGCGCCg -3' miRNA: 3'- cGCGUUCCACcuacucCUGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 554 | 0.68 | 0.498985 |
Target: 5'- aGgGCGGGGUGGccgucgaaGUGcAGGGCgAGCccccGCCg -3' miRNA: 3'- -CgCGUUCCACC--------UAC-UCCUGgUCG----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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