Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11604 | 3' | -56.7 | NC_003085.1 | + | 41459 | 0.75 | 0.189044 |
Target: 5'- cGCGCAAGGcUGGGgcgcGGGugaaguaccgcGCCAGCGCUg -3' miRNA: 3'- -CGCGUUCC-ACCUac--UCC-----------UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 21151 | 0.75 | 0.179141 |
Target: 5'- cCGgAAGGUGGAcugguacgugGAGGGCuaCAGCGCCg -3' miRNA: 3'- cGCgUUCCACCUa---------CUCCUG--GUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 42106 | 0.75 | 0.177696 |
Target: 5'- cGUGuCGAGGUGGcgGAGGACggcaagcgaaugcaCGGCGCg -3' miRNA: 3'- -CGC-GUUCCACCuaCUCCUG--------------GUCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 26716 | 0.76 | 0.152148 |
Target: 5'- cGCGCAGGGcGG-UGAcGGCgCGGCGCCg -3' miRNA: 3'- -CGCGUUCCaCCuACUcCUG-GUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 20816 | 0.8 | 0.089383 |
Target: 5'- uGC-CGGGGUGGAcgccauccuggaUGAGGcgACCGGCGCCg -3' miRNA: 3'- -CGcGUUCCACCU------------ACUCC--UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 17643 | 0.69 | 0.429281 |
Target: 5'- uGCGCAGGcGUgagccacgGGAggGAGGcGCUGGCGCUg -3' miRNA: 3'- -CGCGUUC-CA--------CCUa-CUCC-UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 18819 | 0.68 | 0.458478 |
Target: 5'- gGCG-AAGGUGGAcccUGAGGaguacuacGCC-GCGCUg -3' miRNA: 3'- -CGCgUUCCACCU---ACUCC--------UGGuCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 14870 | 0.68 | 0.471456 |
Target: 5'- cGCGCAAGGUGacggacgagcaGGuguucgccgccauUGAGGaguugcgcaccggccGCCAGCGCg -3' miRNA: 3'- -CGCGUUCCAC-----------CU-------------ACUCC---------------UGGUCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 32282 | 0.66 | 0.58197 |
Target: 5'- cGCGCGgaacucccggcagAGGUGGuucagGAGGcACUugacacaGGUGCCa -3' miRNA: 3'- -CGCGU-------------UCCACCua---CUCC-UGG-------UCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 10151 | 0.67 | 0.573282 |
Target: 5'- uGCGCGGcGG-GGAguaccgcGAGGACCGG-GCg -3' miRNA: 3'- -CGCGUU-CCaCCUa------CUCCUGGUCgCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 15379 | 0.67 | 0.562465 |
Target: 5'- aCGCGgaugcAGGaGcGUGAGGACgAGCGUCa -3' miRNA: 3'- cGCGU-----UCCaCcUACUCCUGgUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 12681 | 0.67 | 0.562465 |
Target: 5'- uGCGCcugccuccGGGUGGAUGAc-GCCA-CGCCg -3' miRNA: 3'- -CGCGu-------UCCACCUACUccUGGUcGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 11660 | 0.67 | 0.551704 |
Target: 5'- uGCGCcGGGUGGccGAGGAgguGGgGCUg -3' miRNA: 3'- -CGCGuUCCACCuaCUCCUgg-UCgCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 592 | 0.67 | 0.551704 |
Target: 5'- nCGCAGGGUGucuc--GACUGGCGCCg -3' miRNA: 3'- cGCGUUCCACcuacucCUGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 17989 | 0.67 | 0.541006 |
Target: 5'- cCGCAGGGcacGGAgcugcGAgagcgcGGACUGGCGCCc -3' miRNA: 3'- cGCGUUCCa--CCUa----CU------CCUGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 13811 | 0.67 | 0.530379 |
Target: 5'- uGCGUgGAGGUGGcgccAUGAcGugCAGaCGCCg -3' miRNA: 3'- -CGCG-UUCCACC----UACUcCugGUC-GCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 47989 | 0.68 | 0.509362 |
Target: 5'- -aGCAAGucgcGGAggGAGGACgCGGCGCa -3' miRNA: 3'- cgCGUUCca--CCUa-CUCCUG-GUCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 554 | 0.68 | 0.498985 |
Target: 5'- aGgGCGGGGUGGccgucgaaGUGcAGGGCgAGCccccGCCg -3' miRNA: 3'- -CgCGUUCCACC--------UAC-UCCUGgUCG----CGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 18552 | 0.68 | 0.478521 |
Target: 5'- aGCaCGAGGUGGcgGgcaAGGACggccaAGCGCUg -3' miRNA: 3'- -CGcGUUCCACCuaC---UCCUGg----UCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 26886 | 0.68 | 0.472462 |
Target: 5'- gGCGCc-GGUGGGUGGacucaacaccgucucGGcgGgCAGCGCCa -3' miRNA: 3'- -CGCGuuCCACCUACU---------------CC--UgGUCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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