Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11604 | 3' | -56.7 | NC_003085.1 | + | 14870 | 0.68 | 0.471456 |
Target: 5'- cGCGCAAGGUGacggacgagcaGGuguucgccgccauUGAGGaguugcgcaccggccGCCAGCGCg -3' miRNA: 3'- -CGCGUUCCAC-----------CU-------------ACUCC---------------UGGUCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 15379 | 0.67 | 0.562465 |
Target: 5'- aCGCGgaugcAGGaGcGUGAGGACgAGCGUCa -3' miRNA: 3'- cGCGU-----UCCaCcUACUCCUGgUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 16044 | 0.71 | 0.332321 |
Target: 5'- cGgGCGAGGU--AUG-GGACguGCGCCa -3' miRNA: 3'- -CgCGUUCCAccUACuCCUGguCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 17643 | 0.69 | 0.429281 |
Target: 5'- uGCGCAGGcGUgagccacgGGAggGAGGcGCUGGCGCUg -3' miRNA: 3'- -CGCGUUC-CA--------CCUa-CUCC-UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 17989 | 0.67 | 0.541006 |
Target: 5'- cCGCAGGGcacGGAgcugcGAgagcgcGGACUGGCGCCc -3' miRNA: 3'- cGCGUUCCa--CCUa----CU------CCUGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 18552 | 0.68 | 0.478521 |
Target: 5'- aGCaCGAGGUGGcgGgcaAGGACggccaAGCGCUg -3' miRNA: 3'- -CGcGUUCCACCuaC---UCCUGg----UCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 18819 | 0.68 | 0.458478 |
Target: 5'- gGCG-AAGGUGGAcccUGAGGaguacuacGCC-GCGCUg -3' miRNA: 3'- -CGCgUUCCACCU---ACUCC--------UGGuCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 19663 | 0.67 | 0.527205 |
Target: 5'- gGgGCAaaaaugGGGUGGAcGAgaagcaugccgccaGGGCCAGUGCg -3' miRNA: 3'- -CgCGU------UCCACCUaCU--------------CCUGGUCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 20816 | 0.8 | 0.089383 |
Target: 5'- uGC-CGGGGUGGAcgccauccuggaUGAGGcgACCGGCGCCg -3' miRNA: 3'- -CGcGUUCCACCU------------ACUCC--UGGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 21151 | 0.75 | 0.179141 |
Target: 5'- cCGgAAGGUGGAcugguacgugGAGGGCuaCAGCGCCg -3' miRNA: 3'- cGCgUUCCACCUa---------CUCCUG--GUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 22608 | 0.68 | 0.468444 |
Target: 5'- uGCGCcuccugaaucgAGGGUGGcgGGGGcacacGCCuGGCGCg -3' miRNA: 3'- -CGCG-----------UUCCACCuaCUCC-----UGG-UCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 22870 | 0.66 | 0.605987 |
Target: 5'- aGCGCccacAGGUGGuaccGAGGAgCCuGGUGCg -3' miRNA: 3'- -CGCGu---UCCACCua--CUCCU-GG-UCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 23445 | 0.67 | 0.541006 |
Target: 5'- gGCGCAgcAGGgacgcauGAcgGAGGcCCAGCGCa -3' miRNA: 3'- -CGCGU--UCCac-----CUa-CUCCuGGUCGCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 24230 | 0.67 | 0.551704 |
Target: 5'- aGCGCAccAGGgcggcgccgGuGAUGAGGuACCAGcCGUa -3' miRNA: 3'- -CGCGU--UCCa--------C-CUACUCC-UGGUC-GCGg -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 25175 | 0.66 | 0.627917 |
Target: 5'- -gGCcuGGUGGcgGuGGcGAUgAGCGCCa -3' miRNA: 3'- cgCGuuCCACCuaC-UC-CUGgUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 25737 | 0.68 | 0.458478 |
Target: 5'- gGCGCcac---GGUGGGGGCCGGgGCCg -3' miRNA: 3'- -CGCGuuccacCUACUCCUGGUCgCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 26475 | 0.66 | 0.610368 |
Target: 5'- cGCGCAccucuggcugcuuggGGGUGGcagacuGGGCCGGCucguccggcuucGCCg -3' miRNA: 3'- -CGCGU---------------UCCACCuacu--CCUGGUCG------------CGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 26716 | 0.76 | 0.152148 |
Target: 5'- cGCGCAGGGcGG-UGAcGGCgCGGCGCCg -3' miRNA: 3'- -CGCGUUCCaCCuACUcCUG-GUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 26886 | 0.68 | 0.472462 |
Target: 5'- gGCGCc-GGUGGGUGGacucaacaccgucucGGcgGgCAGCGCCa -3' miRNA: 3'- -CGCGuuCCACCUACU---------------CC--UgGUCGCGG- -5' |
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11604 | 3' | -56.7 | NC_003085.1 | + | 27616 | 0.69 | 0.419794 |
Target: 5'- uGCGCGGuGuGUGGAgccugGGGGGCUcGcCGCCa -3' miRNA: 3'- -CGCGUU-C-CACCUa----CUCCUGGuC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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