Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11604 | 5' | -56.2 | NC_003085.1 | + | 39762 | 1.1 | 0.00053 |
Target: 5'- uGAGGAGCUCAUCCGCAUCACCCUGACg -3' miRNA: 3'- -CUCCUCGAGUAGGCGUAGUGGGACUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 31883 | 0.66 | 0.592458 |
Target: 5'- --cGAGCUCGUCCGCGaUGCCgUG-Cg -3' miRNA: 3'- cucCUCGAGUAGGCGUaGUGGgACuG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 20066 | 0.66 | 0.592458 |
Target: 5'- -uGGAGCgggaCAUCCGCuuccacgcgCGCUgUGACg -3' miRNA: 3'- cuCCUCGa---GUAGGCGua-------GUGGgACUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 38004 | 0.66 | 0.592458 |
Target: 5'- uGGGAcGCUCAcaCCGCGUCGgCCCcaacGGCg -3' miRNA: 3'- cUCCU-CGAGUa-GGCGUAGU-GGGa---CUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 25666 | 0.66 | 0.581375 |
Target: 5'- -uGGAGUaCAUCCGCAUCGucguaCCggggGACc -3' miRNA: 3'- cuCCUCGaGUAGGCGUAGUg----GGa---CUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 15276 | 0.67 | 0.559348 |
Target: 5'- --cGAGCUCAcCCGCcgCGCCCgcgucaugcUGGCc -3' miRNA: 3'- cucCUCGAGUaGGCGuaGUGGG---------ACUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 48804 | 0.67 | 0.515007 |
Target: 5'- -cGGGGCUCAcggcagcaccucuUUCGCGccgagCGCCUUGGCg -3' miRNA: 3'- cuCCUCGAGU-------------AGGCGUa----GUGGGACUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 9156 | 0.7 | 0.377855 |
Target: 5'- -cGGAGCUCG-CCGCcgCGCaguCCUGAg -3' miRNA: 3'- cuCCUCGAGUaGGCGuaGUG---GGACUg -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 42453 | 0.7 | 0.368966 |
Target: 5'- aGGGAGCg-GUCCGUGUCgagGCCCgUGGCg -3' miRNA: 3'- cUCCUCGagUAGGCGUAG---UGGG-ACUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 7577 | 0.71 | 0.334866 |
Target: 5'- cGAGGGGUUCAUCaCGUAcgCAUCC-GACa -3' miRNA: 3'- -CUCCUCGAGUAG-GCGUa-GUGGGaCUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 40610 | 0.72 | 0.269553 |
Target: 5'- cGAGGGGCcugUgcugacggccgcugcCGUCCuCGUCGCCCUGACg -3' miRNA: 3'- -CUCCUCG---A---------------GUAGGcGUAGUGGGACUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 27634 | 0.73 | 0.249312 |
Target: 5'- uGGGGGGCUCGccgccagcgggacgCCGCAUCGCCaCcGACu -3' miRNA: 3'- -CUCCUCGAGUa-------------GGCGUAGUGG-GaCUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 707 | 0.7 | 0.368966 |
Target: 5'- -cGGGGCaacUCCGCGUgGCgCCUGACg -3' miRNA: 3'- cuCCUCGaguAGGCGUAgUG-GGACUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 13476 | 0.66 | 0.570335 |
Target: 5'- -cGGAGCguuUCCuggGCGUCGgCCUGGCc -3' miRNA: 3'- cuCCUCGaguAGG---CGUAGUgGGACUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 6716 | 0.66 | 0.603575 |
Target: 5'- -uGGAuGC-CGUccaccgcgcCCGCAUCGCCCcGACg -3' miRNA: 3'- cuCCU-CGaGUA---------GGCGUAGUGGGaCUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 16375 | 0.66 | 0.603575 |
Target: 5'- cAGGAGUgagCcUCCGCGggCACguCCUGGCg -3' miRNA: 3'- cUCCUCGa--GuAGGCGUa-GUG--GGACUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 26507 | 0.66 | 0.613603 |
Target: 5'- uGGGccGGCUCGUCCGgcuucgcCGUCGCCgUcGACg -3' miRNA: 3'- cUCC--UCGAGUAGGC-------GUAGUGGgA-CUG- -5' |
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11604 | 5' | -56.2 | NC_003085.1 | + | 12300 | 0.72 | 0.273757 |
Target: 5'- aAGGAGCUCGUCCcCGUCACCg---- -3' miRNA: 3'- cUCCUCGAGUAGGcGUAGUGGgacug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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