miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 34191 0.77 0.10199
Target:  5'- gGGCG-CGGCG-GGUGAgcuCGGCCGCGGc -3'
miRNA:   3'- gUUGCuGCCGUgCCACU---GCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 34721 0.7 0.303579
Target:  5'- -cACGGCGGCGCGuGgcauaccGAUGGCaucgCGCGGa -3'
miRNA:   3'- guUGCUGCCGUGC-Ca------CUGCCG----GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 35339 0.7 0.296369
Target:  5'- ---gGGCaGCACGGUGAUG-CCGUGGc -3'
miRNA:   3'- guugCUGcCGUGCCACUGCcGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 36009 0.68 0.409415
Target:  5'- -cGCGACaGCuugGCGGaUGGCGGCCaUGGg -3'
miRNA:   3'- guUGCUGcCG---UGCC-ACUGCCGGcGCC- -5'
11606 5' -59.3 NC_003085.1 + 36521 0.7 0.300679
Target:  5'- gGACG-CGGCGCGGacgguccUcagaaaucgauucuGGCGGCCGUGGc -3'
miRNA:   3'- gUUGCuGCCGUGCC-------A--------------CUGCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 36914 0.66 0.535403
Target:  5'- cCGGCcaGCGGCGCgGGUGGCaucccucuGCCGCGa -3'
miRNA:   3'- -GUUGc-UGCCGUG-CCACUGc-------CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 37069 0.68 0.418458
Target:  5'- cCGACGACGuGCGgaugcaGGUgGACGGCgCGCa- -3'
miRNA:   3'- -GUUGCUGC-CGUg-----CCA-CUGCCG-GCGcc -5'
11606 5' -59.3 NC_003085.1 + 37143 0.72 0.2321
Target:  5'- aCGGCGACGGCgggcacccugGCGGUGACGGggacgagcuccuucaCGgGGa -3'
miRNA:   3'- -GUUGCUGCCG----------UGCCACUGCCg--------------GCgCC- -5'
11606 5' -59.3 NC_003085.1 + 37506 0.66 0.495874
Target:  5'- --uCGugGGCcaccaucaacaccacCGGUGGCGGCUcgucaGCGGu -3'
miRNA:   3'- guuGCugCCGu--------------GCCACUGCCGG-----CGCC- -5'
11606 5' -59.3 NC_003085.1 + 39027 0.7 0.318401
Target:  5'- aGGCGACGGCAUGcGUgGGCGagcGCUGCGc -3'
miRNA:   3'- gUUGCUGCCGUGC-CA-CUGC---CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 39874 0.67 0.427621
Target:  5'- gGAUGGCGGagagacgcCGGUGcuCGGCgGCGGc -3'
miRNA:   3'- gUUGCUGCCgu------GCCACu-GCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 40553 1.09 0.00042
Target:  5'- aCAACGACGGCACGGUGACGGCCGCGGu -3'
miRNA:   3'- -GUUGCUGCCGUGCCACUGCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 40888 0.73 0.193569
Target:  5'- aCGACGGCGGCaugccACGGUuguugcGGCGGgaGCGGg -3'
miRNA:   3'- -GUUGCUGCCG-----UGCCA------CUGCCggCGCC- -5'
11606 5' -59.3 NC_003085.1 + 41221 0.67 0.446298
Target:  5'- -uGCucUGGCACGGUGACGuGCgGCc- -3'
miRNA:   3'- guUGcuGCCGUGCCACUGC-CGgCGcc -5'
11606 5' -59.3 NC_003085.1 + 41385 0.75 0.152866
Target:  5'- -cAUGACGGUggugGGUGACGGCCGUGu -3'
miRNA:   3'- guUGCUGCCGug--CCACUGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 41701 0.67 0.479058
Target:  5'- gCGACGAUGGCugAugacacggccguccuCGGUGACGGaguacCCGgGGa -3'
miRNA:   3'- -GUUGCUGCCG--U---------------GCCACUGCC-----GGCgCC- -5'
11606 5' -59.3 NC_003085.1 + 42455 0.67 0.456763
Target:  5'- --uUGAgGGCGcCGGUGAUGGCagugaggaguccgaaGCGGc -3'
miRNA:   3'- guuGCUgCCGU-GCCACUGCCGg--------------CGCC- -5'
11606 5' -59.3 NC_003085.1 + 42728 0.72 0.243454
Target:  5'- aGGCGugGGCGuCGGggcgauGCGGgCGCGGu -3'
miRNA:   3'- gUUGCugCCGU-GCCac----UGCCgGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 42748 0.76 0.116872
Target:  5'- uCAuCGGCGGCAUGGgugcggugcagGGCGGCCGCa- -3'
miRNA:   3'- -GUuGCUGCCGUGCCa----------CUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 43762 0.67 0.436902
Target:  5'- gGugGugGGCGCGGgcuugGAcucaacacCGGCCaGCGu -3'
miRNA:   3'- gUugCugCCGUGCCa----CU--------GCCGG-CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.