miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 28017 0.67 0.435969
Target:  5'- uCAACGACGGCuACGuG-GACGGCguccuccUGuCGGa -3'
miRNA:   3'- -GUUGCUGCCG-UGC-CaCUGCCG-------GC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 27517 0.66 0.493882
Target:  5'- gCGGCGcCGGCAUGGaUGACucccucguGGCCaucuccgGCGGc -3'
miRNA:   3'- -GUUGCuGCCGUGCC-ACUG--------CCGG-------CGCC- -5'
11606 5' -59.3 NC_003085.1 + 26711 0.71 0.249613
Target:  5'- gAGCG-CGcGCaggGCGGUGACGGC-GCGGc -3'
miRNA:   3'- gUUGCuGC-CG---UGCCACUGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 26221 0.76 0.123374
Target:  5'- ---gGGCGGCGCGGUGcgaagcgcgGCGGCCGUcuGGa -3'
miRNA:   3'- guugCUGCCGUGCCAC---------UGCCGGCG--CC- -5'
11606 5' -59.3 NC_003085.1 + 25735 0.74 0.174418
Target:  5'- --uCGGCGcCACGGUGGgGGCCGgGGc -3'
miRNA:   3'- guuGCUGCcGUGCCACUgCCGGCgCC- -5'
11606 5' -59.3 NC_003085.1 + 25447 0.72 0.213989
Target:  5'- gAGCGGCGGccgguuuCugGGUGGuCGGCCGCc- -3'
miRNA:   3'- gUUGCUGCC-------GugCCACU-GCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 25342 0.69 0.333759
Target:  5'- gGugGAUGGCgcgcgcuuccggACGGUGACGggcacGCCGaCGGc -3'
miRNA:   3'- gUugCUGCCG------------UGCCACUGC-----CGGC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 25297 0.71 0.268864
Target:  5'- -cGCGACGGC-CGGccaggugGACGacGCCGUGGu -3'
miRNA:   3'- guUGCUGCCGuGCCa------CUGC--CGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 25164 0.73 0.198636
Target:  5'- cCGGCGACcguGGCcUGGUGGCGGUgGCGa -3'
miRNA:   3'- -GUUGCUG---CCGuGCCACUGCCGgCGCc -5'
11606 5' -59.3 NC_003085.1 + 24706 0.73 0.188615
Target:  5'- gGACGGCGGCAUc--GGCGGCuuCGCGGg -3'
miRNA:   3'- gUUGCUGCCGUGccaCUGCCG--GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 24528 0.67 0.475142
Target:  5'- uGACGAaguugUGGuCGCGGUGcgugcGCGGC-GCGGa -3'
miRNA:   3'- gUUGCU-----GCC-GUGCCAC-----UGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 24354 0.79 0.07743
Target:  5'- aCGGCGACGGgACGGccuuUGGCGGCCG-GGc -3'
miRNA:   3'- -GUUGCUGCCgUGCC----ACUGCCGGCgCC- -5'
11606 5' -59.3 NC_003085.1 + 24060 0.66 0.514979
Target:  5'- uGGCGAa-GCGCGG-GAa-GCCGCGGc -3'
miRNA:   3'- gUUGCUgcCGUGCCaCUgcCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 22946 0.67 0.446298
Target:  5'- --uCGACGGCGCGGcgaagccgGACGaGCCGg-- -3'
miRNA:   3'- guuGCUGCCGUGCCa-------CUGC-CGGCgcc -5'
11606 5' -59.3 NC_003085.1 + 22782 0.76 0.113742
Target:  5'- uGGCGACGGCAgCGGcaACGGCCGCu- -3'
miRNA:   3'- gUUGCUGCCGU-GCCacUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 22570 0.75 0.144942
Target:  5'- cCGAUGACuuCACGGgcgUGugGGCCGCGGc -3'
miRNA:   3'- -GUUGCUGccGUGCC---ACugCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 22480 0.74 0.174418
Target:  5'- aCAugGAgGGCACGGUGGCGaCgGaCGGc -3'
miRNA:   3'- -GUugCUgCCGUGCCACUGCcGgC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 19326 0.68 0.391699
Target:  5'- gCGugGGCuGCugGG-GcCGGCgGCGGa -3'
miRNA:   3'- -GUugCUGcCGugCCaCuGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 18339 0.73 0.209118
Target:  5'- gCAACGcgcugccuuACGGgGCGGUG-CaGGCCGUGGa -3'
miRNA:   3'- -GUUGC---------UGCCgUGCCACuG-CCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 18114 0.72 0.231515
Target:  5'- --uUGuCGGCGCGGgcggGACGGCCGgccUGGg -3'
miRNA:   3'- guuGCuGCCGUGCCa---CUGCCGGC---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.