miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 11769 0.74 0.156974
Target:  5'- -uACGACGGUACGGcGGCG-CCGCGc -3'
miRNA:   3'- guUGCUGCCGUGCCaCUGCcGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 41385 0.75 0.152866
Target:  5'- -cAUGACGGUggugGGUGACGGCCGUGu -3'
miRNA:   3'- guUGCUGCCGug--CCACUGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 22570 0.75 0.144942
Target:  5'- cCGAUGACuuCACGGgcgUGugGGCCGCGGc -3'
miRNA:   3'- -GUUGCUGccGUGCC---ACugCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 2348 0.69 0.34164
Target:  5'- -uGCGACauccgggaGGCGCaGUGcgaGGCCGCGGc -3'
miRNA:   3'- guUGCUG--------CCGUGcCACug-CCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 32135 0.68 0.409415
Target:  5'- gCGACGGgGGCGgcUGGUGGCG-CgGUGGg -3'
miRNA:   3'- -GUUGCUgCCGU--GCCACUGCcGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 11513 0.66 0.525153
Target:  5'- -uGCGGgugUGGUGCGGUuacCGGCCGCGc -3'
miRNA:   3'- guUGCU---GCCGUGCCAcu-GCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 24060 0.66 0.514979
Target:  5'- uGGCGAa-GCGCGG-GAa-GCCGCGGc -3'
miRNA:   3'- gUUGCUgcCGUGCCaCUgcCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 28309 0.66 0.504885
Target:  5'- gCAGC-AgGuGCGCGGUggGACGGgCGUGGg -3'
miRNA:   3'- -GUUGcUgC-CGUGCCA--CUGCCgGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 3859 0.66 0.49887
Target:  5'- gGACcACGGCGCGucGACGGCgcgcccgccgucuguCGCGGu -3'
miRNA:   3'- gUUGcUGCCGUGCcaCUGCCG---------------GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 37506 0.66 0.495874
Target:  5'- --uCGugGGCcaccaucaacaccacCGGUGGCGGCUcgucaGCGGu -3'
miRNA:   3'- guuGCugCCGu--------------GCCACUGCCGG-----CGCC- -5'
11606 5' -59.3 NC_003085.1 + 31777 0.66 0.494878
Target:  5'- gUAGCGuGCGGUugGGcGaaGCGGCC-CGGc -3'
miRNA:   3'- -GUUGC-UGCCGugCCaC--UGCCGGcGCC- -5'
11606 5' -59.3 NC_003085.1 + 27517 0.66 0.493882
Target:  5'- gCGGCGcCGGCAUGGaUGACucccucguGGCCaucuccgGCGGc -3'
miRNA:   3'- -GUUGCuGCCGUGCC-ACUG--------CCGG-------CGCC- -5'
11606 5' -59.3 NC_003085.1 + 1500 0.67 0.475142
Target:  5'- cCAGCcuCGGC-CGGUGcgccucACGGCCGCc- -3'
miRNA:   3'- -GUUGcuGCCGuGCCAC------UGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 24528 0.67 0.475142
Target:  5'- uGACGAaguugUGGuCGCGGUGcgugcGCGGC-GCGGa -3'
miRNA:   3'- gUUGCU-----GCC-GUGCCAC-----UGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 44339 0.67 0.465421
Target:  5'- gGGCGGCGaCGCGGgagagGGCGGCCaaucccGCGu -3'
miRNA:   3'- gUUGCUGCcGUGCCa----CUGCCGG------CGCc -5'
11606 5' -59.3 NC_003085.1 + 41221 0.67 0.446298
Target:  5'- -uGCucUGGCACGGUGACGuGCgGCc- -3'
miRNA:   3'- guUGcuGCCGUGCCACUGC-CGgCGcc -5'
11606 5' -59.3 NC_003085.1 + 28210 0.67 0.42486
Target:  5'- -cGCGGaguUGGCGCcagugucggccaugGGUGGCGGCaGCGGu -3'
miRNA:   3'- guUGCU---GCCGUG--------------CCACUGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 37069 0.68 0.418458
Target:  5'- cCGACGACGuGCGgaugcaGGUgGACGGCgCGCa- -3'
miRNA:   3'- -GUUGCUGC-CGUg-----CCA-CUGCCG-GCGcc -5'
11606 5' -59.3 NC_003085.1 + 3945 0.68 0.409415
Target:  5'- gCGGCGauguugucGCGGCcCGGggauggagccaGACGGCCGCGc -3'
miRNA:   3'- -GUUGC--------UGCCGuGCCa----------CUGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 36009 0.68 0.409415
Target:  5'- -cGCGACaGCuugGCGGaUGGCGGCCaUGGg -3'
miRNA:   3'- guUGCUGcCG---UGCC-ACUGCCGGcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.