miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 44339 0.67 0.465421
Target:  5'- gGGCGGCGaCGCGGgagagGGCGGCCaaucccGCGu -3'
miRNA:   3'- gUUGCUGCcGUGCCa----CUGCCGG------CGCc -5'
11606 5' -59.3 NC_003085.1 + 22946 0.67 0.446298
Target:  5'- --uCGACGGCGCGGcgaagccgGACGaGCCGg-- -3'
miRNA:   3'- guuGCUGCCGUGCCa-------CUGC-CGGCgcc -5'
11606 5' -59.3 NC_003085.1 + 32135 0.68 0.409415
Target:  5'- gCGACGGgGGCGgcUGGUGGCG-CgGUGGg -3'
miRNA:   3'- -GUUGCUgCCGU--GCCACUGCcGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 36009 0.68 0.409415
Target:  5'- -cGCGACaGCuugGCGGaUGGCGGCCaUGGg -3'
miRNA:   3'- guUGCUGcCG---UGCC-ACUGCCGGcGCC- -5'
11606 5' -59.3 NC_003085.1 + 3945 0.68 0.409415
Target:  5'- gCGGCGauguugucGCGGCcCGGggauggagccaGACGGCCGCGc -3'
miRNA:   3'- -GUUGC--------UGCCGuGCCa----------CUGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 37069 0.68 0.418458
Target:  5'- cCGACGACGuGCGgaugcaGGUgGACGGCgCGCa- -3'
miRNA:   3'- -GUUGCUGC-CGUg-----CCA-CUGCCG-GCGcc -5'
11606 5' -59.3 NC_003085.1 + 28210 0.67 0.42486
Target:  5'- -cGCGGaguUGGCGCcagugucggccaugGGUGGCGGCaGCGGu -3'
miRNA:   3'- guUGCU---GCCGUG--------------CCACUGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 28017 0.67 0.435969
Target:  5'- uCAACGACGGCuACGuG-GACGGCguccuccUGuCGGa -3'
miRNA:   3'- -GUUGCUGCCG-UGC-CaCUGCCG-------GC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 43762 0.67 0.436902
Target:  5'- gGugGugGGCGCGGgcuugGAcucaacacCGGCCaGCGu -3'
miRNA:   3'- gUugCugCCGUGCCa----CU--------GCCGG-CGCc -5'
11606 5' -59.3 NC_003085.1 + 1906 0.67 0.446298
Target:  5'- --cCGGCGGCugGGUuguuGCGGaagaCGUGGu -3'
miRNA:   3'- guuGCUGCCGugCCAc---UGCCg---GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 46920 0.67 0.446298
Target:  5'- gCGGCaGGCGGCACaGGUu-CGGCgCGCGc -3'
miRNA:   3'- -GUUG-CUGCCGUG-CCAcuGCCG-GCGCc -5'
11606 5' -59.3 NC_003085.1 + 7528 0.66 0.535403
Target:  5'- cCGACGAgGacGCGCGGgccgaggggugUGACGucgaccuuGCCGCGGc -3'
miRNA:   3'- -GUUGCUgC--CGUGCC-----------ACUGC--------CGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.