miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 32135 0.68 0.409415
Target:  5'- gCGACGGgGGCGgcUGGUGGCG-CgGUGGg -3'
miRNA:   3'- -GUUGCUgCCGU--GCCACUGCcGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 19326 0.68 0.391699
Target:  5'- gCGugGGCuGCugGG-GcCGGCgGCGGa -3'
miRNA:   3'- -GUugCUGcCGugCCaCuGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 286 0.69 0.36608
Target:  5'- gCAGCGGCGGCA-GGaccgGGCGGCCucCGa -3'
miRNA:   3'- -GUUGCUGCCGUgCCa---CUGCCGGc-GCc -5'
11606 5' -59.3 NC_003085.1 + 8449 0.69 0.349654
Target:  5'- cCAGCGACGccCACGGcgaUGACGacGCCGCuGGg -3'
miRNA:   3'- -GUUGCUGCc-GUGCC---ACUGC--CGGCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 2348 0.69 0.34164
Target:  5'- -uGCGACauccgggaGGCGCaGUGcgaGGCCGCGGc -3'
miRNA:   3'- guUGCUG--------CCGUGcCACug-CCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 25342 0.69 0.333759
Target:  5'- gGugGAUGGCgcgcgcuuccggACGGUGACGggcacGCCGaCGGc -3'
miRNA:   3'- gUugCUGCCG------------UGCCACUGC-----CGGC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 33215 0.69 0.325245
Target:  5'- aGGCGGCGGCGCagcacgaGGaUGACGacgccaGCCGCGa -3'
miRNA:   3'- gUUGCUGCCGUG-------CC-ACUGC------CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 482 0.69 0.325245
Target:  5'- -cACGACGGCcaucagcGCGGagaUGAaGGCgCGCGGg -3'
miRNA:   3'- guUGCUGCCG-------UGCC---ACUgCCG-GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 10713 0.7 0.318401
Target:  5'- -cGCGA-GGCACuGGcUGACGGCaaGCGGa -3'
miRNA:   3'- guUGCUgCCGUG-CC-ACUGCCGg-CGCC- -5'
11606 5' -59.3 NC_003085.1 + 39027 0.7 0.318401
Target:  5'- aGGCGACGGCAUGcGUgGGCGagcGCUGCGc -3'
miRNA:   3'- gUUGCUGCCGUGC-CA-CUGC---CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 48654 0.7 0.318401
Target:  5'- -uGCGGCGGCACGcG-GACGuccaCCGUGGc -3'
miRNA:   3'- guUGCUGCCGUGC-CaCUGCc---GGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 33263 0.7 0.316143
Target:  5'- aCGGCGAgGaGCGCGGUcACGGCucaccucgaaccagCGCGGc -3'
miRNA:   3'- -GUUGCUgC-CGUGCCAcUGCCG--------------GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 34721 0.7 0.303579
Target:  5'- -cACGGCGGCGCGuGgcauaccGAUGGCaucgCGCGGa -3'
miRNA:   3'- guUGCUGCCGUGC-Ca------CUGCCG----GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 36521 0.7 0.300679
Target:  5'- gGACG-CGGCGCGGacgguccUcagaaaucgauucuGGCGGCCGUGGc -3'
miRNA:   3'- gUUGCuGCCGUGCC-------A--------------CUGCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 12705 0.7 0.296369
Target:  5'- --cCGACGGCGaGGccGGCGGCCGaGGg -3'
miRNA:   3'- guuGCUGCCGUgCCa-CUGCCGGCgCC- -5'
11606 5' -59.3 NC_003085.1 + 35339 0.7 0.296369
Target:  5'- ---gGGCaGCACGGUGAUG-CCGUGGc -3'
miRNA:   3'- guugCUGcCGUGCCACUGCcGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 5166 0.7 0.296369
Target:  5'- gCAGCGGCcauccuGGCGCGGaaggcagGGCGGCgcCGUGGg -3'
miRNA:   3'- -GUUGCUG------CCGUGCCa------CUGCCG--GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 15928 0.71 0.27825
Target:  5'- gCGugGACGGCGugugacaggcucggcUGGUGGCgcucccuuGGCCGCuGGg -3'
miRNA:   3'- -GUugCUGCCGU---------------GCCACUG--------CCGGCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 7317 0.71 0.268864
Target:  5'- --cCGACGGCcaucGCGGaGGCGGCugaggaCGCGGg -3'
miRNA:   3'- guuGCUGCCG----UGCCaCUGCCG------GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 25297 0.71 0.268864
Target:  5'- -cGCGACGGC-CGGccaggugGACGacGCCGUGGu -3'
miRNA:   3'- guUGCUGCCGuGCCa------CUGC--CGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.