Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11607 | 3' | -56.1 | NC_003085.1 | + | 48760 | 0.7 | 0.404638 |
Target: 5'- -gGACCUGcucaggccgcgcccGAGGCCGGaCGcgGGACAGGu -3' miRNA: 3'- ggUUGGAC--------------CUCCGGUC-GCa-CCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 46696 | 0.66 | 0.657456 |
Target: 5'- gCCGcuGCCUGcuuccGGCCAGCGgaguccuUGGGCAGc -3' miRNA: 3'- -GGU--UGGACcu---CCGGUCGC-------ACCUGUUc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 45698 | 0.68 | 0.506493 |
Target: 5'- aCAGUCUGGuGGCCAgGgGUGGuuuCAAGg -3' miRNA: 3'- gGUUGGACCuCCGGU-CgCACCu--GUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 43659 | 0.66 | 0.646443 |
Target: 5'- gCAGCCcgGGGGGCgggguugCAGCGgagacGGGCAGa -3' miRNA: 3'- gGUUGGa-CCUCCG-------GUCGCa----CCUGUUc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 43499 | 0.67 | 0.55976 |
Target: 5'- cCCAccGCCUccaGcAGcCCGGCGUGGACGGGa -3' miRNA: 3'- -GGU--UGGA---CcUCcGGUCGCACCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 42541 | 0.66 | 0.62549 |
Target: 5'- cCCGcuucGCCUc--GGCCAGCGcgcGGGCGAGg -3' miRNA: 3'- -GGU----UGGAccuCCGGUCGCa--CCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 40857 | 1.11 | 0.000514 |
Target: 5'- gCCAACCUGGAGGCCAGCGUGGACAAGg -3' miRNA: 3'- -GGUUGGACCUCCGGUCGCACCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 40669 | 0.69 | 0.455507 |
Target: 5'- gCAACCUcgcGGAGccGCCGGCGcagggGGACGAc -3' miRNA: 3'- gGUUGGA---CCUC--CGGUCGCa----CCUGUUc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 35713 | 0.68 | 0.506493 |
Target: 5'- gUCAACuUUGGcGGCCacGGCGaGGGCAGGg -3' miRNA: 3'- -GGUUG-GACCuCCGG--UCGCaCCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 34359 | 0.68 | 0.49609 |
Target: 5'- gCgGACCUccGGAGGCucaCAGgGUGGGCGc- -3' miRNA: 3'- -GgUUGGA--CCUCCG---GUCgCACCUGUuc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 32867 | 0.73 | 0.283759 |
Target: 5'- aCCGcCCgGGAGGcCCAGCGcauUGGugGAGc -3' miRNA: 3'- -GGUuGGaCCUCC-GGUCGC---ACCugUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 32363 | 0.66 | 0.63652 |
Target: 5'- uUCAaacGCCUGGAGaGCgCAGCuGcGGACAc- -3' miRNA: 3'- -GGU---UGGACCUC-CG-GUCG-CaCCUGUuc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 31985 | 0.7 | 0.426276 |
Target: 5'- cCCGuuacGCCUGG-GGCUGGCGcugccucccuUGGACAAc -3' miRNA: 3'- -GGU----UGGACCuCCGGUCGC----------ACCUGUUc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 31383 | 0.68 | 0.518042 |
Target: 5'- cCCGGCCgcaaaGAGGCCAGCcgcacguacucgaaGGACGGGa -3' miRNA: 3'- -GGUUGGac---CUCCGGUCGca------------CCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 29303 | 0.71 | 0.354104 |
Target: 5'- --cACCUcGGccauGGCCAGCGcuauUGGACAGGg -3' miRNA: 3'- gguUGGA-CCu---CCGGUCGC----ACCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 28651 | 0.66 | 0.658557 |
Target: 5'- cCCuuCCUGGAGGCggggaagGGCGUccuacuGGGCAu- -3' miRNA: 3'- -GGuuGGACCUCCGg------UCGCA------CCUGUuc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 27629 | 0.71 | 0.354104 |
Target: 5'- -gAGCCUGGGGggcucgccGCCAGCG-GGACGc- -3' miRNA: 3'- ggUUGGACCUC--------CGGUCGCaCCUGUuc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 24391 | 0.66 | 0.647545 |
Target: 5'- -uGGCCUGGAcggGGCCGuGCcgGUGGACc-- -3' miRNA: 3'- ggUUGGACCU---CCGGU-CG--CACCUGuuc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 21473 | 0.68 | 0.485785 |
Target: 5'- gCCGACaaGGGcGGCCugcgcGGCGUGGugGAc -3' miRNA: 3'- -GGUUGgaCCU-CCGG-----UCGCACCugUUc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 18456 | 0.69 | 0.455507 |
Target: 5'- aCGuCCUGGAGGagcGCGUGGACu-- -3' miRNA: 3'- gGUuGGACCUCCgguCGCACCUGuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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