miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11607 5' -58.7 NC_003085.1 + 34425 0.66 0.478521
Target:  5'- -cCCUGgGCUGCGGCUU--GGGCCg- -3'
miRNA:   3'- uaGGACgCGGCGCUGGAguUCUGGac -5'
11607 5' -58.7 NC_003085.1 + 26352 0.66 0.468444
Target:  5'- gGUgCUGCGCCGCcuCgCUCAGGACa-- -3'
miRNA:   3'- -UAgGACGCGGCGcuG-GAGUUCUGgac -5'
11607 5' -58.7 NC_003085.1 + 9754 0.66 0.458478
Target:  5'- -cCUUGCGCUGCG-CCUCAAcGGCg-- -3'
miRNA:   3'- uaGGACGCGGCGCuGGAGUU-CUGgac -5'
11607 5' -58.7 NC_003085.1 + 34609 0.66 0.438892
Target:  5'- -cCUUGCGCgCGCG-CCUaUAGGACUUGu -3'
miRNA:   3'- uaGGACGCG-GCGCuGGA-GUUCUGGAC- -5'
11607 5' -58.7 NC_003085.1 + 47101 0.66 0.438892
Target:  5'- ----cGCGCCGCGGCCUCGcacugcGCCUc -3'
miRNA:   3'- uaggaCGCGGCGCUGGAGUuc----UGGAc -5'
11607 5' -58.7 NC_003085.1 + 44244 0.67 0.401207
Target:  5'- uUCCUGCcggGCCGCGucGCgCUCGGacucGGCCUGc -3'
miRNA:   3'- uAGGACG---CGGCGC--UG-GAGUU----CUGGAC- -5'
11607 5' -58.7 NC_003085.1 + 40659 0.67 0.392112
Target:  5'- --gCUGCGCCGCGcaACCUCGcGGAgCCg- -3'
miRNA:   3'- uagGACGCGGCGC--UGGAGU-UCU-GGac -5'
11607 5' -58.7 NC_003085.1 + 11300 0.67 0.383153
Target:  5'- -aCCUGCGCCGCGGCgggGAGcGCCa- -3'
miRNA:   3'- uaGGACGCGGCGCUGgagUUC-UGGac -5'
11607 5' -58.7 NC_003085.1 + 3623 0.68 0.365646
Target:  5'- -aCgUGCGCCGCGACUggcuGGCCg- -3'
miRNA:   3'- uaGgACGCGGCGCUGGaguuCUGGac -5'
11607 5' -58.7 NC_003085.1 + 48762 0.68 0.357103
Target:  5'- -aCCUGCucagGCCGCG-CC-CGAGGCCg- -3'
miRNA:   3'- uaGGACG----CGGCGCuGGaGUUCUGGac -5'
11607 5' -58.7 NC_003085.1 + 16618 0.68 0.340439
Target:  5'- gGUCCcGCgGCgCGCGGCCUCucGGGCCc- -3'
miRNA:   3'- -UAGGaCG-CG-GCGCUGGAGu-UCUGGac -5'
11607 5' -58.7 NC_003085.1 + 17928 0.69 0.324346
Target:  5'- -gCCUGCGCCcagcGCGGCgCUCuGGGCuCUGc -3'
miRNA:   3'- uaGGACGCGG----CGCUG-GAGuUCUG-GAC- -5'
11607 5' -58.7 NC_003085.1 + 3696 0.69 0.301281
Target:  5'- aGUCCUGaCGCCGCGuCC---GGugCUGg -3'
miRNA:   3'- -UAGGAC-GCGGCGCuGGaguUCugGAC- -5'
11607 5' -58.7 NC_003085.1 + 12951 0.7 0.286619
Target:  5'- cGUCC-GCGCCGCGuCCggAAGGCCc- -3'
miRNA:   3'- -UAGGaCGCGGCGCuGGagUUCUGGac -5'
11607 5' -58.7 NC_003085.1 + 45566 0.7 0.286619
Target:  5'- cUCCUcGCGCagCGCGGCCUCAAuGCgCUGc -3'
miRNA:   3'- uAGGA-CGCG--GCGCUGGAGUUcUG-GAC- -5'
11607 5' -58.7 NC_003085.1 + 42844 0.7 0.279502
Target:  5'- cGUCCgGCGCCG-GACUUgAGGACCc- -3'
miRNA:   3'- -UAGGaCGCGGCgCUGGAgUUCUGGac -5'
11607 5' -58.7 NC_003085.1 + 16254 0.71 0.246016
Target:  5'- cGUgCUGCGCCGCcGCCUcCAGGACg-- -3'
miRNA:   3'- -UAgGACGCGGCGcUGGA-GUUCUGgac -5'
11607 5' -58.7 NC_003085.1 + 689 0.71 0.227565
Target:  5'- uGUCCcGCGUC-CGGCCUCGGGcgcgGCCUGa -3'
miRNA:   3'- -UAGGaCGCGGcGCUGGAGUUC----UGGAC- -5'
11607 5' -58.7 NC_003085.1 + 11169 0.71 0.22168
Target:  5'- -aCCUGCuUCGCGACUgcgggacgCGAGACCUGc -3'
miRNA:   3'- uaGGACGcGGCGCUGGa-------GUUCUGGAC- -5'
11607 5' -58.7 NC_003085.1 + 45277 0.72 0.199425
Target:  5'- cGUCCUGCGuCUGCuccACCUCAAcACCUGu -3'
miRNA:   3'- -UAGGACGC-GGCGc--UGGAGUUcUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.