miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11608 5' -59.6 NC_003085.1 + 15746 0.66 0.46138
Target:  5'- uGGUAGGGGGUccgguugacgggcacUCCAGgG-CCAaGGGAg -3'
miRNA:   3'- cCCGUUCCCCG---------------AGGUCgCaGGU-CUCU- -5'
11608 5' -59.6 NC_003085.1 + 34311 0.66 0.457469
Target:  5'- cGGGCA--GGGCaCCgaGGCGUCCAGc-- -3'
miRNA:   3'- -CCCGUucCCCGaGG--UCGCAGGUCucu -5'
11608 5' -59.6 NC_003085.1 + 19353 0.66 0.457469
Target:  5'- uGGCGuccguguagAGGaGGCggCCGGCGUCCuucuGAGc -3'
miRNA:   3'- cCCGU---------UCC-CCGa-GGUCGCAGGu---CUCu -5'
11608 5' -59.6 NC_003085.1 + 17490 0.66 0.446808
Target:  5'- aGGCGuaacGGGGGCagucgCCAGCccgccgaggaccuGUCCGGuGAu -3'
miRNA:   3'- cCCGU----UCCCCGa----GGUCG-------------CAGGUCuCU- -5'
11608 5' -59.6 NC_003085.1 + 10654 0.66 0.438189
Target:  5'- aGGCAGccaaaguccucGGGGCUgCCGGCGUgCUGGAc- -3'
miRNA:   3'- cCCGUU-----------CCCCGA-GGUCGCA-GGUCUcu -5'
11608 5' -59.6 NC_003085.1 + 11450 0.67 0.410166
Target:  5'- aGGaguGGGGCUgcaccgCCGGgGUCCAGAcGAa -3'
miRNA:   3'- cCCguuCCCCGA------GGUCgCAGGUCU-CU- -5'
11608 5' -59.6 NC_003085.1 + 25371 0.68 0.340349
Target:  5'- cGGGCAcgccgacGGcGGGCUUCAccGuCGUCCAGAu- -3'
miRNA:   3'- -CCCGU-------UC-CCCGAGGU--C-GCAGGUCUcu -5'
11608 5' -59.6 NC_003085.1 + 43633 0.68 0.317534
Target:  5'- cGGGCAcGGGaGGCcauccgccUCCAGCaGcCCGGGGGg -3'
miRNA:   3'- -CCCGU-UCC-CCG--------AGGUCG-CaGGUCUCU- -5'
11608 5' -59.6 NC_003085.1 + 19209 0.69 0.298075
Target:  5'- gGGGCGgcGGGGGCUgggcgccgcgcaaggCCuGCG-CCAGGGc -3'
miRNA:   3'- -CCCGU--UCCCCGA---------------GGuCGCaGGUCUCu -5'
11608 5' -59.6 NC_003085.1 + 30712 0.71 0.212335
Target:  5'- cGGcGCAAGGGGgaagcggaCCGGCGUCCcaacGAGAa -3'
miRNA:   3'- -CC-CGUUCCCCga------GGUCGCAGGu---CUCU- -5'
11608 5' -59.6 NC_003085.1 + 11619 0.72 0.18621
Target:  5'- gGGGCugugcAGGGGCUgcuaCCAGCGcgCgCGGAGGg -3'
miRNA:   3'- -CCCGu----UCCCCGA----GGUCGCa-G-GUCUCU- -5'
11608 5' -59.6 NC_003085.1 + 41177 1.1 0.000276
Target:  5'- uGGGCAAGGGGCUCCAGCGUCCAGAGAc -3'
miRNA:   3'- -CCCGUUCCCCGAGGUCGCAGGUCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.