miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11609 3' -59.7 NC_003085.1 + 48352 0.66 0.465074
Target:  5'- uGGAcaucggGACGg--GCUcGCUGCCGCGGa -3'
miRNA:   3'- -CCUca----CUGCagaCGA-CGGCGGCGCCg -5'
11609 3' -59.7 NC_003085.1 + 48265 0.67 0.390858
Target:  5'- cGGGGUGAgGUUgGUcaaugGUCGCCcCGGCa -3'
miRNA:   3'- -CCUCACUgCAGaCGa----CGGCGGcGCCG- -5'
11609 3' -59.7 NC_003085.1 + 47080 0.67 0.408685
Target:  5'- gGGAGUaccuGCGagaGCUcGCgCGCCGCGGCc -3'
miRNA:   3'- -CCUCAc---UGCagaCGA-CG-GCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 43890 0.67 0.427011
Target:  5'- aGGGcGUaGACGUg-GCgcaCCGUCGCGGCg -3'
miRNA:   3'- -CCU-CA-CUGCAgaCGac-GGCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 43510 0.66 0.445816
Target:  5'- aGGGGUGGacug-GCauCUGCCGCGGCg -3'
miRNA:   3'- -CCUCACUgcagaCGacGGCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 42073 0.66 0.484756
Target:  5'- cGGGGUGAagacgaugcCGaUUUGCUGCgGCUccgugucgagGUGGCg -3'
miRNA:   3'- -CCUCACU---------GC-AGACGACGgCGG----------CGCCG- -5'
11609 3' -59.7 NC_003085.1 + 41540 1.13 0.000171
Target:  5'- uGGAGUGACGUCUGCUGCCGCCGCGGCg -3'
miRNA:   3'- -CCUCACUGCAGACGACGGCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 40428 0.67 0.390858
Target:  5'- cGGAGgcGCG-CUGcCUGCCGCCGUccaGCc -3'
miRNA:   3'- -CCUCacUGCaGAC-GACGGCGGCGc--CG- -5'
11609 3' -59.7 NC_003085.1 + 40351 0.69 0.317162
Target:  5'- uGGGcgGugGgcaagCcGCUGCUGcCCGCGGCg -3'
miRNA:   3'- cCUCa-CugCa----GaCGACGGC-GGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 40236 0.71 0.229985
Target:  5'- -uGGUGGCGg--GCUcuucGCCGCCGgGGCc -3'
miRNA:   3'- ccUCACUGCagaCGA----CGGCGGCgCCG- -5'
11609 3' -59.7 NC_003085.1 + 38156 0.69 0.332595
Target:  5'- uGGuGGUGGCG-CUcc--CCGCCGCGGCg -3'
miRNA:   3'- -CC-UCACUGCaGAcgacGGCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 37450 0.71 0.235904
Target:  5'- cGGcaGGUGcgccaGCGUCaggccGCUGCUGCCGCaGGCc -3'
miRNA:   3'- -CC--UCAC-----UGCAGa----CGACGGCGGCG-CCG- -5'
11609 3' -59.7 NC_003085.1 + 35140 0.66 0.45539
Target:  5'- ---uUGugGgccgGCUGCCGCaacaugaGCGGCa -3'
miRNA:   3'- ccucACugCaga-CGACGGCGg------CGCCG- -5'
11609 3' -59.7 NC_003085.1 + 34067 0.68 0.348571
Target:  5'- cGGuuUGGC-UCUGUUccGCCGCCGaugaGGCg -3'
miRNA:   3'- -CCucACUGcAGACGA--CGGCGGCg---CCG- -5'
11609 3' -59.7 NC_003085.1 + 32433 0.67 0.408685
Target:  5'- aGGAG-GGCGUC-GUUGgaccgaaCGCCcGCGGCc -3'
miRNA:   3'- -CCUCaCUGCAGaCGACg------GCGG-CGCCG- -5'
11609 3' -59.7 NC_003085.1 + 30396 0.7 0.287932
Target:  5'- cGGGcccGGCGcCUGCU-CCGCCGCGcGCc -3'
miRNA:   3'- cCUCa--CUGCaGACGAcGGCGGCGC-CG- -5'
11609 3' -59.7 NC_003085.1 + 29798 0.69 0.32481
Target:  5'- aGGAGgucGcCGUagaUGCUGCCcuuGUCGUGGCu -3'
miRNA:   3'- -CCUCa--CuGCAg--ACGACGG---CGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 28613 0.73 0.172845
Target:  5'- uGGuGUGGCG-CUcGCUGCUGCgGcCGGCc -3'
miRNA:   3'- -CCuCACUGCaGA-CGACGGCGgC-GCCG- -5'
11609 3' -59.7 NC_003085.1 + 26677 0.73 0.172845
Target:  5'- gGGAGcGGcCGUUgccGCUGCCGucgccaCCGCGGCg -3'
miRNA:   3'- -CCUCaCU-GCAGa--CGACGGC------GGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 25289 0.67 0.390858
Target:  5'- uGGAGaUGACGUcCUGUgggGCCGUCGguaGCa -3'
miRNA:   3'- -CCUC-ACUGCA-GACGa--CGGCGGCgc-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.