Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11609 | 3' | -59.7 | NC_003085.1 | + | 8037 | 0.68 | 0.373546 |
Target: 5'- cGGAGa-GCGUauggCUGUUGCCGCCcgaGGCu -3' miRNA: 3'- -CCUCacUGCA----GACGACGGCGGcg-CCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 24161 | 0.68 | 0.356762 |
Target: 5'- ----cGGCGUCguccaccugGCcgGCCGUCGCGGUg -3' miRNA: 3'- ccucaCUGCAGa--------CGa-CGGCGGCGCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 34067 | 0.68 | 0.348571 |
Target: 5'- cGGuuUGGC-UCUGUUccGCCGCCGaugaGGCg -3' miRNA: 3'- -CCucACUGcAGACGA--CGGCGGCg---CCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 38156 | 0.69 | 0.332595 |
Target: 5'- uGGuGGUGGCG-CUcc--CCGCCGCGGCg -3' miRNA: 3'- -CC-UCACUGCaGAcgacGGCGGCGCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 29798 | 0.69 | 0.32481 |
Target: 5'- aGGAGgucGcCGUagaUGCUGCCcuuGUCGUGGCu -3' miRNA: 3'- -CCUCa--CuGCAg--ACGACGG---CGGCGCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 40351 | 0.69 | 0.317162 |
Target: 5'- uGGGcgGugGgcaagCcGCUGCUGcCCGCGGCg -3' miRNA: 3'- cCUCa-CugCa----GaCGACGGC-GGCGCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 17132 | 0.69 | 0.309651 |
Target: 5'- aGGAGgcacuggacGGCGUCUGCUacugGCgCGCUGaGGCg -3' miRNA: 3'- -CCUCa--------CUGCAGACGA----CG-GCGGCgCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 23213 | 0.69 | 0.301545 |
Target: 5'- aGGcAGUGGCcgggCUGCUccagacgGCCGCCGCGcuucGCa -3' miRNA: 3'- -CC-UCACUGca--GACGA-------CGGCGGCGC----CG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 30396 | 0.7 | 0.287932 |
Target: 5'- cGGGcccGGCGcCUGCU-CCGCCGCGcGCc -3' miRNA: 3'- cCUCa--CUGCaGACGAcGGCGGCGC-CG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 1531 | 0.7 | 0.280964 |
Target: 5'- aGGcGUGacuccaGCGUCUGCUGUCgcgagGCCGUGcGCg -3' miRNA: 3'- -CCuCAC------UGCAGACGACGG-----CGGCGC-CG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 7551 | 0.7 | 0.27413 |
Target: 5'- gGGuGUGACGUCgacCU--UGCCGCGGCc -3' miRNA: 3'- -CCuCACUGCAGac-GAcgGCGGCGCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 5098 | 0.7 | 0.26743 |
Target: 5'- cGGAGUuggaGGCGUUUcucGC-GUCGCCGCGGg -3' miRNA: 3'- -CCUCA----CUGCAGA---CGaCGGCGGCGCCg -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 17590 | 0.71 | 0.248124 |
Target: 5'- cGGGGUGAcaCGcCUGCUGCucCGCCGUGc- -3' miRNA: 3'- -CCUCACU--GCaGACGACG--GCGGCGCcg -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 11450 | 0.71 | 0.235904 |
Target: 5'- aGGAGUGGgG-CUGCa-CCGCCGgGGUc -3' miRNA: 3'- -CCUCACUgCaGACGacGGCGGCgCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 37450 | 0.71 | 0.235904 |
Target: 5'- cGGcaGGUGcgccaGCGUCaggccGCUGCUGCCGCaGGCc -3' miRNA: 3'- -CC--UCAC-----UGCAGa----CGACGGCGGCG-CCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 9562 | 0.71 | 0.229985 |
Target: 5'- aGAGacGGCGUUUGgcCUGCCGCCGCcgagcaccGGCg -3' miRNA: 3'- cCUCa-CUGCAGAC--GACGGCGGCG--------CCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 40236 | 0.71 | 0.229985 |
Target: 5'- -uGGUGGCGg--GCUcuucGCCGCCGgGGCc -3' miRNA: 3'- ccUCACUGCagaCGA----CGGCGGCgCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 28613 | 0.73 | 0.172845 |
Target: 5'- uGGuGUGGCG-CUcGCUGCUGCgGcCGGCc -3' miRNA: 3'- -CCuCACUGCaGA-CGACGGCGgC-GCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 26677 | 0.73 | 0.172845 |
Target: 5'- gGGAGcGGcCGUUgccGCUGCCGucgccaCCGCGGCg -3' miRNA: 3'- -CCUCaCU-GCAGa--CGACGGC------GGCGCCG- -5' |
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11609 | 3' | -59.7 | NC_003085.1 | + | 12774 | 0.73 | 0.168331 |
Target: 5'- uGGGGUGAUGcCc-CUGCCGCCGUugucgGGCa -3' miRNA: 3'- -CCUCACUGCaGacGACGGCGGCG-----CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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