miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1161 3' -49.9 NC_001132.2 + 76647 0.66 0.99793
Target:  5'- -aACGGAAC--UCCCGUaGCGUCucggGGAUa -3'
miRNA:   3'- caUGCCUUGcaAGGGCA-UGUAG----UCUG- -5'
1161 3' -49.9 NC_001132.2 + 124565 0.66 0.997893
Target:  5'- uUACGGGAguucCGggaCCCGUGgacacguCGUCGGACg -3'
miRNA:   3'- cAUGCCUU----GCaa-GGGCAU-------GUAGUCUG- -5'
1161 3' -49.9 NC_001132.2 + 150575 0.66 0.997075
Target:  5'- -aACGGAuGCGUcuacgaacaacUCCCGUaacgcgagaaagGCGUCGGAg -3'
miRNA:   3'- caUGCCU-UGCA-----------AGGGCA------------UGUAGUCUg -5'
1161 3' -49.9 NC_001132.2 + 137021 0.67 0.99526
Target:  5'- -gACGGAACaGUgUCCGUAC-UUGGGCg -3'
miRNA:   3'- caUGCCUUG-CAaGGGCAUGuAGUCUG- -5'
1161 3' -49.9 NC_001132.2 + 9385 0.67 0.994482
Target:  5'- -gACGGAuccaucgagACGgcgUCCCGgACGUCAcgGACg -3'
miRNA:   3'- caUGCCU---------UGCa--AGGGCaUGUAGU--CUG- -5'
1161 3' -49.9 NC_001132.2 + 72863 0.67 0.993604
Target:  5'- gGUugGGGACGUcCUCGUAgAcgCGGAUc -3'
miRNA:   3'- -CAugCCUUGCAaGGGCAUgUa-GUCUG- -5'
1161 3' -49.9 NC_001132.2 + 22003 0.68 0.987407
Target:  5'- -aACGGAGCG-UCCgUGUACAugaUCAcGACg -3'
miRNA:   3'- caUGCCUUGCaAGG-GCAUGU---AGU-CUG- -5'
1161 3' -49.9 NC_001132.2 + 147810 0.68 0.990284
Target:  5'- -gACGGAACauaCCCGUACAacauaCAGAUa -3'
miRNA:   3'- caUGCCUUGcaaGGGCAUGUa----GUCUG- -5'
1161 3' -49.9 NC_001132.2 + 110750 0.68 0.991279
Target:  5'- aGUACGGAuaguugcgacaccauAccuaccugguuuccuCGUUCCgGUACGUCGGAg -3'
miRNA:   3'- -CAUGCCU---------------U---------------GCAAGGgCAUGUAGUCUg -5'
1161 3' -49.9 NC_001132.2 + 42533 0.69 0.981913
Target:  5'- cGUGCGG-ACGUUCgCCGUACccgAUCAa-- -3'
miRNA:   3'- -CAUGCCuUGCAAG-GGCAUG---UAGUcug -5'
1161 3' -49.9 NC_001132.2 + 107946 0.69 0.974789
Target:  5'- uGUACGGAAgcgcguuuucUGUUUCUGUACGUaccccCGGACa -3'
miRNA:   3'- -CAUGCCUU----------GCAAGGGCAUGUA-----GUCUG- -5'
1161 3' -49.9 NC_001132.2 + 28596 0.69 0.974789
Target:  5'- -aACGGAACGUauaCUCGUACA--GGACu -3'
miRNA:   3'- caUGCCUUGCAa--GGGCAUGUagUCUG- -5'
1161 3' -49.9 NC_001132.2 + 92252 0.76 0.739021
Target:  5'- aGUACGGAuauCGUUCCCGUGgAUCGc-- -3'
miRNA:   3'- -CAUGCCUu--GCAAGGGCAUgUAGUcug -5'
1161 3' -49.9 NC_001132.2 + 42575 0.97 0.065012
Target:  5'- uGUACGGAACGUcUCCGUACAUCAGACg -3'
miRNA:   3'- -CAUGCCUUGCAaGGGCAUGUAGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.