Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11610 | 3' | -57.4 | NC_003085.1 | + | 17943 | 0.66 | 0.584147 |
Target: 5'- gGCGcucUGGGCUCUgCUGggGCAccugaagcGCCGGCa -3' miRNA: 3'- -UGU---ACCUGAGAgGGCagCGU--------CGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 43805 | 0.68 | 0.438892 |
Target: 5'- aGCGUGucCgUCaUCuuGUCGUAGCCGGUg -3' miRNA: 3'- -UGUACcuG-AG-AGggCAGCGUCGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 28077 | 0.67 | 0.478521 |
Target: 5'- -aGUGGAgUCUCCUGUCcGCcuucaccaacuuGGgCAGCg -3' miRNA: 3'- ugUACCUgAGAGGGCAG-CG------------UCgGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 34414 | 0.67 | 0.498985 |
Target: 5'- gGCAUGGGgaUUCCgGccagccaaaacUCGgAGCCGGCg -3' miRNA: 3'- -UGUACCUgaGAGGgC-----------AGCgUCGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 39092 | 0.67 | 0.498985 |
Target: 5'- cGCAUaGGCaacgCUCCCGcCGCAGUCcuGGCc -3' miRNA: 3'- -UGUAcCUGa---GAGGGCaGCGUCGG--UCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 1299 | 0.67 | 0.519829 |
Target: 5'- ---cGGAgUUCUCCCG-CGUGGCC-GCg -3' miRNA: 3'- uguaCCU-GAGAGGGCaGCGUCGGuCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 4438 | 0.66 | 0.530379 |
Target: 5'- ---cGGuGCUcCUCaCCGUCGCcGUCGGCg -3' miRNA: 3'- uguaCC-UGA-GAG-GGCAGCGuCGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 44665 | 0.66 | 0.530379 |
Target: 5'- ---cGGGCUUugggCCCGUCcugGCGgauGCCAGCa -3' miRNA: 3'- uguaCCUGAGa---GGGCAG---CGU---CGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 10784 | 0.66 | 0.562465 |
Target: 5'- gGCAUGccacCUCUUCCG-CGCAGCgGuGCg -3' miRNA: 3'- -UGUACcu--GAGAGGGCaGCGUCGgU-CG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 23784 | 0.68 | 0.438892 |
Target: 5'- gGCAUGGGCgaaUUCGUC-CGGCCGGUa -3' miRNA: 3'- -UGUACCUGagaGGGCAGcGUCGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 38160 | 0.68 | 0.429281 |
Target: 5'- -gGUGGcGCUC-CCCGcCGCGGCgCAGg -3' miRNA: 3'- ugUACC-UGAGaGGGCaGCGUCG-GUCg -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 26966 | 0.68 | 0.419794 |
Target: 5'- cGCGUccGaGCUCggCCUG-CGCAGCCGGCu -3' miRNA: 3'- -UGUA--CcUGAGa-GGGCaGCGUCGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 28028 | 0.8 | 0.071098 |
Target: 5'- uACGUGGACggcgucCUCCUGUCGgAGCCgAGCg -3' miRNA: 3'- -UGUACCUGa-----GAGGGCAGCgUCGG-UCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 24794 | 0.77 | 0.108972 |
Target: 5'- aACAUGGugccGCUCagCCCGUCGCGGCgcgCGGCu -3' miRNA: 3'- -UGUACC----UGAGa-GGGCAGCGUCG---GUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 18470 | 0.77 | 0.113984 |
Target: 5'- cGCGUGGACUUcaaacucgcagccCCCGUCcucaagGCGGCCAGCa -3' miRNA: 3'- -UGUACCUGAGa------------GGGCAG------CGUCGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 42531 | 0.76 | 0.140082 |
Target: 5'- uGCGUGG-C-CUCCCGcuUCGCcucGGCCAGCg -3' miRNA: 3'- -UGUACCuGaGAGGGC--AGCG---UCGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 40473 | 0.73 | 0.227565 |
Target: 5'- -gGUGGGa-CUCCUGUCGCuGCUGGCg -3' miRNA: 3'- ugUACCUgaGAGGGCAGCGuCGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 9953 | 0.72 | 0.239732 |
Target: 5'- -uGUGGGaaugggCUCCCGgaagaaGCGGCCAGCu -3' miRNA: 3'- ugUACCUga----GAGGGCag----CGUCGGUCG- -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 27525 | 0.71 | 0.301281 |
Target: 5'- gGCAUGGAUgaCUCCC-UCGUGGCCAu- -3' miRNA: 3'- -UGUACCUGa-GAGGGcAGCGUCGGUcg -5' |
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11610 | 3' | -57.4 | NC_003085.1 | + | 26896 | 0.7 | 0.332321 |
Target: 5'- -gGUGGACUCaacaCCGUCuCGGCgGGCa -3' miRNA: 3'- ugUACCUGAGag--GGCAGcGUCGgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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