miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11610 3' -57.4 NC_003085.1 + 25794 0.68 0.409506
Target:  5'- uGCGUGGACgccugggcggcguUCgCCUG-CGCGGCCuGCu -3'
miRNA:   3'- -UGUACCUG-------------AGaGGGCaGCGUCGGuCG- -5'
11610 3' -57.4 NC_003085.1 + 597 0.69 0.392112
Target:  5'- uGCGgcGACUgCaagCCCGUCGCGGCCuacGGCg -3'
miRNA:   3'- -UGUacCUGA-Ga--GGGCAGCGUCGG---UCG- -5'
11610 3' -57.4 NC_003085.1 + 30426 0.69 0.383153
Target:  5'- ---cGGAaUCUCCaCGaCGCAGCCAGa -3'
miRNA:   3'- uguaCCUgAGAGG-GCaGCGUCGGUCg -5'
11610 3' -57.4 NC_003085.1 + 13535 0.7 0.332321
Target:  5'- uACGaGGGCaUCUUCCGccugCGCGGCUGGCc -3'
miRNA:   3'- -UGUaCCUG-AGAGGGCa---GCGUCGGUCG- -5'
11610 3' -57.4 NC_003085.1 + 26896 0.7 0.332321
Target:  5'- -gGUGGACUCaacaCCGUCuCGGCgGGCa -3'
miRNA:   3'- ugUACCUGAGag--GGCAGcGUCGgUCG- -5'
11610 3' -57.4 NC_003085.1 + 6474 0.7 0.316514
Target:  5'- -gAUGGACUCggCCGaugaaGUGGCCAGCg -3'
miRNA:   3'- ugUACCUGAGagGGCag---CGUCGGUCG- -5'
11610 3' -57.4 NC_003085.1 + 42690 0.71 0.308826
Target:  5'- aGCGgaaGGGCUCUCgCCGUCcGCcacGGCgCGGCa -3'
miRNA:   3'- -UGUa--CCUGAGAG-GGCAG-CG---UCG-GUCG- -5'
11610 3' -57.4 NC_003085.1 + 27525 0.71 0.301281
Target:  5'- gGCAUGGAUgaCUCCC-UCGUGGCCAu- -3'
miRNA:   3'- -UGUACCUGa-GAGGGcAGCGUCGGUcg -5'
11610 3' -57.4 NC_003085.1 + 9953 0.72 0.239732
Target:  5'- -uGUGGGaaugggCUCCCGgaagaaGCGGCCAGCu -3'
miRNA:   3'- ugUACCUga----GAGGGCag----CGUCGGUCG- -5'
11610 3' -57.4 NC_003085.1 + 40473 0.73 0.227565
Target:  5'- -gGUGGGa-CUCCUGUCGCuGCUGGCg -3'
miRNA:   3'- ugUACCUgaGAGGGCAGCGuCGGUCG- -5'
11610 3' -57.4 NC_003085.1 + 42531 0.76 0.140082
Target:  5'- uGCGUGG-C-CUCCCGcuUCGCcucGGCCAGCg -3'
miRNA:   3'- -UGUACCuGaGAGGGC--AGCG---UCGGUCG- -5'
11610 3' -57.4 NC_003085.1 + 18470 0.77 0.113984
Target:  5'- cGCGUGGACUUcaaacucgcagccCCCGUCcucaagGCGGCCAGCa -3'
miRNA:   3'- -UGUACCUGAGa------------GGGCAG------CGUCGGUCG- -5'
11610 3' -57.4 NC_003085.1 + 24794 0.77 0.108972
Target:  5'- aACAUGGugccGCUCagCCCGUCGCGGCgcgCGGCu -3'
miRNA:   3'- -UGUACC----UGAGa-GGGCAGCGUCG---GUCG- -5'
11610 3' -57.4 NC_003085.1 + 28028 0.8 0.071098
Target:  5'- uACGUGGACggcgucCUCCUGUCGgAGCCgAGCg -3'
miRNA:   3'- -UGUACCUGa-----GAGGGCAGCgUCGG-UCG- -5'
11610 3' -57.4 NC_003085.1 + 42167 1.1 0.000423
Target:  5'- gACAUGGACUCUCCCGUCGCAGCCAGCc -3'
miRNA:   3'- -UGUACCUGAGAGGGCAGCGUCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.