miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11611 3' -64 NC_003085.1 + 49292 0.66 0.278272
Target:  5'- gGCUGCugCGUCGcGuCGGcGuCCCGGg- -3'
miRNA:   3'- gUGACGugGCGGCaC-GCC-C-GGGCCau -5'
11611 3' -64 NC_003085.1 + 30380 0.66 0.278272
Target:  5'- uGCgGCGCaCuCCGUcCGGGCCCGGc- -3'
miRNA:   3'- gUGaCGUG-GcGGCAcGCCCGGGCCau -5'
11611 3' -64 NC_003085.1 + 20286 0.66 0.271573
Target:  5'- uCGCgGCGCUGCCacUGCGGGUCCa--- -3'
miRNA:   3'- -GUGaCGUGGCGGc-ACGCCCGGGccau -5'
11611 3' -64 NC_003085.1 + 30497 0.66 0.269588
Target:  5'- uGCUGCgcaggaagcgcgccACCGUCG-GCgGGGCCCuGUAg -3'
miRNA:   3'- gUGACG--------------UGGCGGCaCG-CCCGGGcCAU- -5'
11611 3' -64 NC_003085.1 + 12052 0.66 0.258564
Target:  5'- --gUGCGCCGCUucGCGGGCuaccCCGGg- -3'
miRNA:   3'- gugACGUGGCGGcaCGCCCG----GGCCau -5'
11611 3' -64 NC_003085.1 + 28360 0.66 0.258564
Target:  5'- cCGCgGCACCGCCGUgGCGcGGaCCGu-- -3'
miRNA:   3'- -GUGaCGUGGCGGCA-CGC-CCgGGCcau -5'
11611 3' -64 NC_003085.1 + 26111 0.67 0.240011
Target:  5'- gGCUGCGCCucggcgGCCG-GCGGcGCuuGGc- -3'
miRNA:   3'- gUGACGUGG------CGGCaCGCC-CGggCCau -5'
11611 3' -64 NC_003085.1 + 11458 0.67 0.234078
Target:  5'- gGCUGCACCGCCG---GGGUCCa--- -3'
miRNA:   3'- gUGACGUGGCGGCacgCCCGGGccau -5'
11611 3' -64 NC_003085.1 + 21405 0.67 0.22827
Target:  5'- cCACUGCACUGgCGUGaaGGcGCUCGGc- -3'
miRNA:   3'- -GUGACGUGGCgGCACg-CC-CGGGCCau -5'
11611 3' -64 NC_003085.1 + 38610 0.67 0.211571
Target:  5'- uGCaUGCACCGCCGUGCucGUCgGGa- -3'
miRNA:   3'- gUG-ACGUGGCGGCACGccCGGgCCau -5'
11611 3' -64 NC_003085.1 + 19380 0.68 0.195935
Target:  5'- uGCUGUGCaGCCGcGUGGGC-CGGUAc -3'
miRNA:   3'- gUGACGUGgCGGCaCGCCCGgGCCAU- -5'
11611 3' -64 NC_003085.1 + 967 0.68 0.19493
Target:  5'- cCGCUGCcggggcaggacacGCCGCCGUGUccaaGGGCUaccaagucaucaaCGGUGg -3'
miRNA:   3'- -GUGACG-------------UGGCGGCACG----CCCGG-------------GCCAU- -5'
11611 3' -64 NC_003085.1 + 48987 0.71 0.118659
Target:  5'- gCGCUGaugGCCGUCGUGCGcuccuuguuGGCCgGGUAg -3'
miRNA:   3'- -GUGACg--UGGCGGCACGC---------CCGGgCCAU- -5'
11611 3' -64 NC_003085.1 + 32467 0.71 0.112419
Target:  5'- gCGCUucucGuCGCCGUCGgcgucGCGGGCCCGGa- -3'
miRNA:   3'- -GUGA----C-GUGGCGGCa----CGCCCGGGCCau -5'
11611 3' -64 NC_003085.1 + 34076 0.71 0.106486
Target:  5'- -uCUGUuccGCCGCCGaugagGCGGGUUCGGUGg -3'
miRNA:   3'- guGACG---UGGCGGCa----CGCCCGGGCCAU- -5'
11611 3' -64 NC_003085.1 + 47717 0.72 0.103631
Target:  5'- gACUGCugCGCCugcUGaCGGGCgCGGUGc -3'
miRNA:   3'- gUGACGugGCGGc--AC-GCCCGgGCCAU- -5'
11611 3' -64 NC_003085.1 + 38899 0.72 0.095493
Target:  5'- aCACUacgGCGCCGCCGacucucgcaagGCGGgguuGCCCGGUGg -3'
miRNA:   3'- -GUGA---CGUGGCGGCa----------CGCC----CGGGCCAU- -5'
11611 3' -64 NC_003085.1 + 42665 1.05 0.00022
Target:  5'- cCACUGCACCGCCGUGCGGGCCCGGUAc -3'
miRNA:   3'- -GUGACGUGGCGGCACGCCCGGGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.